GgaINT0088806 @ galGal3
Intron Retention
Gene
ENSGALG00000010186 | CANX_CHICK
Description
NA
Coordinates
chr3:31553869-31554217:-
Coord C1 exon
chr3:31554178-31554217
Coord A exon
chr3:31553935-31554177
Coord C2 exon
chr3:31553869-31553934
Length
243 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
ACCTCTCTTTCTGGCCTCAGGAA
3' ss Score
10.35
Exon sequences
Seq C1 exon
GGAGCTGGATGAGGAGATCTCGGCAGACCTGGCAGATGAG
Seq A exon
GTAGGAGCCACCAGTCTCCTTTAGCTGAGGCTGGGGCTGAGGAGTGGGAGCTGTGGGCGGGAGGTGGCTGTGTGGGCTTGGGATGTCACTGTGGCAGAGACTGGCTGCAAGGATCACAGTGGTGGGGACGTGAGAAGGAGTAAAGGTGAGAGGGACTTCTCACCCAGAGGCTCAAATATTTGTTGAGCCTCTGAGGCAGGGCAGCGCCTGGCTTTGATTACTAACCTCTCTTTCTGGCCTCAG
Seq C2 exon
GAAGAAATAACCGAGGACGACATTGAGGATGGTTTCAAGAATATGTTCCAGCAGCTGGCAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186:ENSGALT00000016557:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]