BtaINT0031272 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17819268-17819886:+
Coord C1 exon
chr23:17819268-17819384
Coord A exon
chr23:17819385-17819821
Coord C2 exon
chr23:17819822-17819886
Length
437 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CTCCCTTTGCCTCCTCCCCGAAA
3' ss Score
1.94
Exon sequences
Seq C1 exon
GCATCAAGCTGAACAACAAGGTCACGCAGGTGCTGGTGGCCAGGTACGCGAATGACAGCTTGATCATGGAGTTTGACAGCTTCATCAGCTGTTTCCTGAGGCTGAAGGCCATGTTCA
Seq A exon
GTGAGTCAGCCGGGCACCTGCCCACACCCCACCCCGGGCCATTGGCCCACCGGCCTTCTCCCGCATACCTGCGCGAGAAGCACTGCTCCAGAACCCTCCCCTCCACAGGGCGCAGACAATCTGGGTTCAAATTCCAGCCCCACCATTGCGGGCTCTGTTGCCTTGACCAAGTCACTGTATCTCTCTGTGCCTGTAAGTGTAGATAATAGTGCTGCCTACATAGGACCATGGTAGAGGTTAAATGAGATAGTATCTAGAGAGCACTCAGAACTGGCCGTGGTTCAGAGCAAGGCTTTAGGAAGGAGTCCTTATCATTAACTCCCTACTGGACTGGGGATGTAGCTGGAGAGAGGGATACCCTTTCTGACCTCTGCCCTAGTTGAAAATGGGTGACCACTGACTTACCTCCCAACCATCCTCCCTTTGCCTCCTCCCCG
Seq C2 exon
AAACAGCGTACTTTCTAACCATGGACCCTGAGAACACTGGCCAGATTTCCCTGGACCTGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066:ENSBTAT00000004690:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(43.3=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(20.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAAGCTGAACAACAAGGT
R:
CTGGTTCAGGTCCAGGGAAAT
Band lengths:
182-619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]