HsaINT0027363 @ hg38
Intron Retention
Gene
ENSG00000137225 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr6:44183119-44183763:+
Coord C1 exon
chr6:44183119-44183235
Coord A exon
chr6:44183236-44183704
Coord C2 exon
chr6:44183705-44183763
Length
469 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CCGCTTCCTCTGTAACGCAGCAT
3' ss Score
4.69
Exon sequences
Seq C1 exon
GCATCAAGCTGAACAACAAGGTAATGCAGGTCCTGGTGGCCAGGTATGCAGATGATGACCTGATCATAGACTTTGACAGCTTCATCAGCTGTTTCCTGAGGCTAAAGACCATGTTCA
Seq A exon
GTGAGTTAGGCATCTACCCACTCCCCAGCCTAGGCCAGGGGCCGCGGGCCCTTTCCCAAACACCCACCCTGATGGGTGCTGCTCCAGATCCCCTCCCCCTTACAAGGCACACATGAAATGGATTCAAAGCCCAGCTCCGCCACTTGCTGGCAGAGGTGACTTGAGCAAGTCACTTAATCTTTCTGTGCCTCCATTCCCTCCTCTTTAGAATGTGGATAATAATAGTACTGCCCTCAAAGGACTGAGGTGCAGGTTAAACCAGTTAGTCTATGGAAGGCAATCAGAACTGGGCCTGGCTCCTGGTGAGGCTATGTGAGTTGCTATCATTAATTCCCCACTTGGCTAGGGGATTTATGTGGGGAACAGCCAGGAACACCTGGTGTCGCCCCTTCCTACCTAGTTGGGAGTGGTTCTTTCGGAACACTGACTTAGCATTCAGCCCCTCTCCCCCGCTTCCTCTGTAACGCAG
Seq C2 exon
CATTCTTTCTAACCATGGACCCCAAGAATACTGGCCATATTTGCTTGAGCCTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137225:ENST00000398776:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(48.4=77.5)
A:
NA
C2:
PF134991=EF-hand_7=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development