HsaEX0012350 @ hg38
Exon Skipping
Gene
ENSG00000137225 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr6:44183119-44184402:+
Coord C1 exon
chr6:44183119-44183235
Coord A exon
chr6:44183705-44183763
Coord C2 exon
chr6:44183906-44184402
Length
59 bp
Sequences
Splice sites
3' ss Seq
CCGCTTCCTCTGTAACGCAGCAT
3' ss Score
4.69
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GCATCAAGCTGAACAACAAGGTAATGCAGGTCCTGGTGGCCAGGTATGCAGATGATGACCTGATCATAGACTTTGACAGCTTCATCAGCTGTTTCCTGAGGCTAAAGACCATGTTCA
Seq A exon
CATTCTTTCTAACCATGGACCCCAAGAATACTGGCCATATTTGCTTGAGCCTGGAACAG
Seq C2 exon
TGGCTGCAGATGACCATGTGGGGATAGAGGCGCTGTAGGAGCCTGGTCATCTCTACCAGCAGCAGCAGCAGCGAGGTTCTAGCCCAGGAGGGTGGGGTGCTTCTTGTAGCCCTCAGCTCTCCGGTCTCTGCTGATGAAATGGGCTCCAGGTGGCAGTGCCCGGGTCCCAGGTGCCGTGTTTACTGCAGCAGTGGGACCTCCGTGCCCACTCCCCCAGCTCAGAGGCTTTCTCTTTTTTCCCCAACCCGGCTTCTGATGGCTGGCTTTCCCCCACCATCGCTCTCTCAGAGTATATTTTACTAAAGAGTAGTTGATGCTTCCCCAGGGTCCCCCTGGCTGGGGAGGCCAAGAATAGGGAAGGGACTTGTAGCCCGTTTCTTACCCTCCATGCTTGCTGTCCTGCTCACACCTACCTGCTGACCACCCATCCTGGCACAGCCTCTGTTTTCCTCCCCATCTGTGGATACTATTCTAATAAATAGCACATGCCATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137225_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(48.4=77.5)
A:
PF134991=EF-hand_7=FE(20.0=100)
C2:
PF134991=EF-hand_7=PD(3.2=33.3)
Main Skipping Isoform:
ENST00000398776fB11289
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCAGGTATGCAGATGAT
R:
TGCTGCTGGTAGAGATGACCA
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development