HsaINT0027364 @ hg38
Intron Retention
Gene
ENSG00000137225 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr6:44183705-44184402:+
Coord C1 exon
chr6:44183705-44183763
Coord A exon
chr6:44183764-44183905
Coord C2 exon
chr6:44183906-44184402
Length
142 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TCTGCTTCCTGTCTCCACAGTGG
3' ss Score
10.95
Exon sequences
Seq C1 exon
CATTCTTTCTAACCATGGACCCCAAGAATACTGGCCATATTTGCTTGAGCCTGGAACAG
Seq A exon
GTACTTGGAGAAGGGTGGGAAGGAATCTGCAGGATTGCACCTGCCTGCCCCTCAACCCCACCCCCACCCAGCTCTGATGTCCCCGGGCCAGCATCCTGCCCCCGTCTCTTCCCACCCTGGGATCTGCTTCCTGTCTCCACAG
Seq C2 exon
TGGCTGCAGATGACCATGTGGGGATAGAGGCGCTGTAGGAGCCTGGTCATCTCTACCAGCAGCAGCAGCAGCGAGGTTCTAGCCCAGGAGGGTGGGGTGCTTCTTGTAGCCCTCAGCTCTCCGGTCTCTGCTGATGAAATGGGCTCCAGGTGGCAGTGCCCGGGTCCCAGGTGCCGTGTTTACTGCAGCAGTGGGACCTCCGTGCCCACTCCCCCAGCTCAGAGGCTTTCTCTTTTTTCCCCAACCCGGCTTCTGATGGCTGGCTTTCCCCCACCATCGCTCTCTCAGAGTATATTTTACTAAAGAGTAGTTGATGCTTCCCCAGGGTCCCCCTGGCTGGGGAGGCCAAGAATAGGGAAGGGACTTGTAGCCCGTTTCTTACCCTCCATGCTTGCTGTCCTGCTCACACCTACCTGCTGACCACCCATCCTGGCACAGCCTCTGTTTTCCTCCCCATCTGTGGATACTATTCTAATAAATAGCACATGCCATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137225:ENST00000398776:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(20.0=100)
A:
NA
C2:
PF134991=EF-hand_7=PD(3.2=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACCCCAAGAATACTGGC
R:
TCCCACTGCTGCAGTAAACAC
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development