RnoEX0016671 @ rn6
Exon Skipping
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17748497-17750363:+
Coord C1 exon
chr9:17748497-17748613
Coord A exon
chr9:17749746-17749804
Coord C2 exon
chr9:17749916-17750363
Length
59 bp
Sequences
Splice sites
3' ss Seq
CGCCCTTATCCTTAAAACAGCGT
3' ss Score
6.77
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCATCAGAATGAACAACAGGGTGACTGAGGTGGTCGTTGCTAGATATGCAGATGCCAACATGATCGTGGATTTTGACAACTTCATCAACTGTTTCCTAAGGCTCAAGGCCATGTTTG
Seq A exon
CGTTCTTCTTATCCATGGACACCAAGAAAACTGGTTCTATTTGCCTGAATATAAACCAG
Seq C2 exon
TGGCTGCACATAACCATGTGGGGGTAGGGAGATGCCGAGCCTGGCTCCCTCCCTTCTCCCTCCGCCAACGGTGCTCAGGCGGGGACGGTGAATGCTCCTTGTCGCCCTCGTTCTCCAGTGCCCCAGGCGCAGTGTTTACTTTGTGCCCCTGCTCTGGGCTGGACGGGAACTCTAACCCCCACTCCACCCTCACACCACCCGGAGCACTCTCACACCGTATTTTGACTAAAAATTAGGTGGATTCCCCTCCATAACCGCCCCTCCCCACCAGTTTTTCTCTGGCCAAGGCAGCCTTGCAGTTTGGTGTTTCCGCACGCTGTCAACTCACAACCGCCCTCTTGTCAGAAATTCCATTGCCTACCACCACCACCCCCAACCCAGCGTCGTACACATTATTCTAATAAATAGGACATGGTTAACCACCTAATTCTTAAACACCAAAGACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025-'25-33,'25-32,26-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTTCCTAAGGCTCAAGGC
R:
GACAAGGAGCATTCACCGTCC
Band lengths:
133-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]