HsaEX0012350 @ hg19
Exon Skipping
Gene
ENSG00000137225 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:1478]
Coordinates
chr6:44150856-44152139:+
Coord C1 exon
chr6:44150856-44150972
Coord A exon
chr6:44151442-44151500
Coord C2 exon
chr6:44151643-44152139
Length
59 bp
Sequences
Splice sites
3' ss Seq
CCGCTTCCTCTGTAACGCAGCAT
3' ss Score
4.69
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GCATCAAGCTGAACAACAAGGTAATGCAGGTCCTGGTGGCCAGGTATGCAGATGATGACCTGATCATAGACTTTGACAGCTTCATCAGCTGTTTCCTGAGGCTAAAGACCATGTTCA
Seq A exon
CATTCTTTCTAACCATGGACCCCAAGAATACTGGCCATATTTGCTTGAGCCTGGAACAG
Seq C2 exon
TGGCTGCAGATGACCATGTGGGGATAGAGGCGCTGTAGGAGCCTGGTCATCTCTACCAGCAGCAGCAGCAGCGAGGTTCTAGCCCAGGAGGGTGGGGTGCTTCTTGTAGCCCTCAGCTCTCCGGTCTCTGCTGATGAAATGGGCTCCAGGTGGCAGTGCCCGGGTCCCAGGTGCCGTGTTTACTGCAGCAGTGGGACCTCCGTGCCCACTCCCCCAGCTCAGAGGCTTTCTCTTTTTTCCCCAACCCGGCTTCTGATGGCTGGCTTTCCCCCACCATCGCTCTCTCAGAGTATATTTTACTAAAGAGTAGTTGATGCTTCCCCAGGGTCCCCCTGGCTGGGGAGGCCAAGAATAGGGAAGGGACTTGTAGCCCGTTTCTTACCCTCCATGCTTGCTGTCCTGCTCACACCTACCTGCTGACCACCCATCCTGGCACAGCCTCTGTTTTCCTCCCCATCTGTGGATACTATTCTAATAAATAGCACATGCCATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137225_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(41.1=100)
A:
PF134991=EF-hand_7=FE(20.0=100)
C2:
PF134991=EF-hand_7=PD(3.2=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCAGGTATGCAGATGAT
R:
TGCTGCTGGTAGAGATGACCA
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)