MmuEX0009059 @ mm10
Exon Skipping
Gene
ENSMUSG00000058626 | Capn11
Description
calpain 11 [Source:MGI Symbol;Acc:MGI:1352490]
Coordinates
chr17:45630204-45631901:-
Coord C1 exon
chr17:45631788-45631901
Coord A exon
chr17:45630726-45630784
Coord C2 exon
chr17:45630204-45630611
Length
59 bp
Sequences
Splice sites
3' ss Seq
CGCCCTTATCCTTAAAACAGCGT
3' ss Score
6.77
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCATCAAGATGAACAACAGAGTGACCGAGGTAGTCGTTGCCAGGTACTCGGATAACATGATTGTGGACTTTGACAGCTTCCTCAACTGTTTCCTGAGGCTCAAGGCCATGTTTG
Seq A exon
CGTTCTTCTTATCCATGGACACCAAGAAAACTGGTTCTATTTGCTTGGATATTAACCAG
Seq C2 exon
TGGCTGCAAATAACCATGTGGGGGTAGGGAGATGCGAAGCCTGGCTCCCTCGTTCCTCCCTCCGCCGGTGGCGCTCCTGCTCCGGCCAGGATGGTGGATGCTCCTTGTCGCTCTCGCTCTCCAGTGCCCCAGGCACAGTGTTTACTCTGGTCCCCTGATCCGGGCTGACCGGAACACCAACACCCCCCTCCCCCACCCCCACCACGCCCCGAGCACTCTCACGCCGTATTTAGACTAAAAATGAGGTGGATTCTCCGCCAGTTTTTCTCTGGCGAAGGCAATCTTCAGCTTAAGTGTTCCCGCGTGCTGTCAACTCACACCCGCCTCCTAGCCCGCCCTCTTGTCAGGAATTCCATCGCCTCCCCGCGCCGCGTCGTACACATTATTCTAATAAAGAGGACAAGGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058626_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTCCTGAGGCTCAAGGC
R:
CGACAAGGAGCATCCACCATC
Band lengths:
139-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types