RnoINT0028974 @ rn6
Intron Retention
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17748497-17749804:+
Coord C1 exon
chr9:17748497-17748613
Coord A exon
chr9:17748614-17749745
Coord C2 exon
chr9:17749746-17749804
Length
1132 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CGCCCTTATCCTTAAAACAGCGT
3' ss Score
6.77
Exon sequences
Seq C1 exon
GCATCAGAATGAACAACAGGGTGACTGAGGTGGTCGTTGCTAGATATGCAGATGCCAACATGATCGTGGATTTTGACAACTTCATCAACTGTTTCCTAAGGCTCAAGGCCATGTTTG
Seq A exon
GTGAGTGAGGCACCTGCCCTGTCCTGGTTAGGCCAGGAGAGCTGGCTTGCTCCCACACCCATTCACCCTGAGGCCTGTTGCTAACAGAACCTCCCACCCAGAGCACACATCAGACCCAAGTTCAAATCCACAAGGAGCTGGGGCTGTGACTTCTGTCTGTACCCCCTATTTCCTTCTCCAGGGGCTAGGGATGGAACCCAGTTGGTCCAGTGTTTACCTAGCTTGCAGCAAGCCCCAATGTGGTGATACACATTTTAATCCCAACACTCTGGAGATGAGGGCAGAAAAAAATCAGGAGTTCAATCAGCTACAGAGTGAGTCTGAGGTCAGCCTGGGTTGGCCAAAAGACCTGGTCTCAAAATTTAAATAAACAAAAATAAAAAGATTGTCCCAAGGATTAAAAAGCCCATATTTATAATTTTTTTTAAGATTTATTTATTTTATTTTTATGTACAGCATTCTGCCTGCATATGTGACTGCAGGCCAGAAGAGGGCACCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCATATTTATAATTCTTGAACTTGGGAAGCTGAGACAGGAGGATCACAAGTTTGGGGCAACCTTGGCTATTTAGTGAGACTTTGAGGGAAAACAATATGTGTGTAAAAGTGCTTGCTACCAAGCCTGAAGACCTGAGTTCAATTCCCAGGCCTGCGTGGTGGAAGGAGAGAATCAACAACCACAGGTTGTCTCTGACCTCCACAGGTACAAGCTGTGGCATGTGCGCACCCGCATGCCCCTCTGACTCTCCCACACAATAAATAAATGTAAAACAAATAATAAGTCAGTACTCCCCTTGTCTTCCCAGGACTCTCTAGTCAGAGTAAATGGGTCCTGGCCAAGCGCTCTGAAGCAGGCTTGTCTCCTAACCAGGGTAGTTGTGATTCATTCCTGATGAAAAAGGAATACCTTTCCATTACCTGGCAGAGCGGCTCCTCTTTGGAGCGCCGGTCTTTTAGACCATGTCTCAGCTCTAACCCCGCCCCCACCCTCTACCCCCGCCCTGCGCCCTTATCCTTAAAACAG
Seq C2 exon
CGTTCTTCTTATCCATGGACACCAAGAAAACTGGTTCTATTTGCCTGAATATAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025:ENSRNOT00000065754:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]