BtaINT0031277 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17813843-17814120:+
Coord C1 exon
chr23:17813843-17813944
Coord A exon
chr23:17813945-17814034
Coord C2 exon
chr23:17814035-17814120
Length
90 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TCTGCCCACAACCCACCCAGGTC
3' ss Score
5.26
Exon sequences
Seq C1 exon
GCCCTCTGTGTTCTGCAGGTCACCCACGAACATGAGCTGGAGTCCTTGACACAGGGTATGCTGGTGAGAGGACATGCTTACTCAGTGACCGGCCTCCAGGAT
Seq A exon
GTGAGTCTGACCCCTGCAACCCCACCCAGAGGGGCGCGAGGAGAACTTCTTTGACCCTAAGCTCCTGACCTCTGCCCACAACCCACCCAG
Seq C2 exon
GTCTCCTACCAAGGCAGGACAGAAACACTGATCCGAGTCCGGAATCCCTGGGGCCGGATTGAGTGGAATGGAGCCTGGAGTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066:ENSBTAT00000004690:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(10.9=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGTTCTGCAGGTCACC
R:
CTCCATTCCACTCAATCCGGC
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]