RnoINT0028980 @ rn6
Intron Retention
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17741157-17741418:+
Coord C1 exon
chr9:17741157-17741240
Coord A exon
chr9:17741241-17741332
Coord C2 exon
chr9:17741333-17741418
Length
92 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
ATTCATGCCTCTCTCCCCAGGTT
3' ss Score
10.35
Exon sequences
Seq C1 exon
GCCACCAACAGTGACGATGTGGAAAAAATGGCCCATAATATGCTGGTGAAAGGTCACGCTTATGCAATCACCGGCCTACAAGAT
Seq A exon
GTGAGTACAGGCAAATGGCCTCCCGTGAGAGTCAGGGGTGTGTGAGAGCCACCCCTGACGGGTGTCCTGAGCATTCATGCCTCTCTCCCCAG
Seq C2 exon
GTTTACTACAGAGACAAGTTGGAAACCCTAATTCGAATCCAGAACCCCTGGGGCAGGATTGAGTGGAATGGAGCCTGGAGTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025:ENSRNOT00000065754:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACAGTGACGATGTGGAA
R:
TTGTCACTCCAGGCTCCATTC
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]