BtaINT0031278 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17814035-17814374:+
Coord C1 exon
chr23:17814035-17814120
Coord A exon
chr23:17814121-17814299
Coord C2 exon
chr23:17814300-17814374
Length
179 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
CCCACCTGTCTCTGCTCCAGCGC
3' ss Score
9.01
Exon sequences
Seq C1 exon
GTCTCCTACCAAGGCAGGACAGAAACACTGATCCGAGTCCGGAATCCCTGGGGCCGGATTGAGTGGAATGGAGCCTGGAGTGACAA
Seq A exon
GTAGGTGGCTCGCCAGCACTCTGGGGGTAGGGGCAGAGCACACCGCAGACCCCACCCCCACGGAGCAAAGCCAAGCCACCGAGAGATTCTCCATCTAACCAGGACTCTCAAGTGGCTCAGGGGTGAGGGGAGCCCCGGGGGAGGAACAAGCTCTGCTCCCCCACCTGTCTCTGCTCCAG
Seq C2 exon
CGCCAAGGAGTGGGAGGAGGTGGCCCCAGATGTCCAGAGGCAGCTGCTGCACAGGAAGGAGGACGGGGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066:ENSBTAT00000004690:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTACCAAGGCAGGACAGA
R:
CAGAACTCCCCGTCCTCCTTC
Band lengths:
159-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]