RnoINT0028981 @ rn6
Intron Retention
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17741333-17741655:+
Coord C1 exon
chr9:17741333-17741418
Coord A exon
chr9:17741419-17741580
Coord C2 exon
chr9:17741581-17741655
Length
162 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
CCACCGTTTTCTCTCTGCAGAGC
3' ss Score
12.02
Exon sequences
Seq C1 exon
GTTTACTACAGAGACAAGTTGGAAACCCTAATTCGAATCCAGAACCCCTGGGGCAGGATTGAGTGGAATGGAGCCTGGAGTGACAA
Seq A exon
GTAAGGGCTTTGACCAGAGAGAAGGGGACAAAAACACAAGTAGGGTCCCCAAGGGAGCCAGTGTCACAGCAGAGCCAACCCTTGTCCCCAGTGCTGCGTGCGAGGTTTTATAAGAACTGGGAGAGGTGGCTGCCCTTCCCGCCCACCGTTTTCTCTCTGCAG
Seq C2 exon
AGCCAAGGAGTGGGAAGAGGTGATGCCGGAAGTTCAGATGCAGCTGCTGCACAAGAAGGAAGACGGGGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025:ENSRNOT00000065754:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGACAAGTTGGAAACCCT
R:
CAGAACTCCCCGTCTTCCTTC
Band lengths:
154-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]