BtaINT0031359 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012778 | CAPN2
Description
Bos taurus calpain 2, (m/II) large subunit (CAPN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103086]
Coordinates
chr16:27834100-27834730:+
Coord C1 exon
chr16:27834100-27834168
Coord A exon
chr16:27834169-27834651
Coord C2 exon
chr16:27834652-27834730
Length
483 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
TTCTGTTTTGTATGTTCCAGAAA
3' ss Score
9.8
Exon sequences
Seq C1 exon
TCGGATGGGAGTGGCAAACTGGGTCTGAAGGAGTTCTACATTCTCTGGACGAAGATTCAGAAATACCAA
Seq A exon
GTGAGAGCCCATGAGGGCCGGGCGGCAGGGGCAGTGGGTCTGTGTTGGGATGTGGAGGAACAGCTCCAAGGGGAGGGGACTGTGCCTGTGACGGAGCTCAGAATGGGTGCAAACAGGTCGGGGCAAATTAAGTGGCATACTTCCTTATGGACTGGAGACGGGCTCATCTAAAAGCCACCATCAAACGTCCTGAAAAGGTTTGTGTAACTGTAATCCCTTGTAGTTTGGGTTTCTGACAGCTCAAGTGCAAAGATTACAGAAGATAGTAACAGGACTCATGGAGTTGGCTAGGTGACTTGATGGGCTTATTTATAATCCAGCTCACACAAAGAGGCAAAATACTATTTAAGGCTGAAACGTGGATGATTTTTCCAAGGCCAAAGTAGAGGCACAGAGCTGGAAACACCCCAGCCCCACTTAGCACATAGCACAGAGGTAACTTGCTGCCTTTCAGGTCATGATTTTCTGTTTTGTATGTTCCAG
Seq C2 exon
AAAATTTACCGGGAAATTGATGTGGACCGGTCTGGAACCATGAACTCCTATGAGATGCGGAAAGCATTAGAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012778:ENSBTAT00000047532:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(2.4=8.7)
A:
NA
C2:
PF134991=EF-hand_7=FE(30.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development