BtaINT0031599 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006572 | CARD9
Description
Bos taurus caspase recruitment domain family, member 9 (CARD9), mRNA. [Source:RefSeq mRNA;Acc:NM_001077111]
Coordinates
chr11:103876015-103876431:-
Coord C1 exon
chr11:103876349-103876431
Coord A exon
chr11:103876265-103876348
Coord C2 exon
chr11:103876015-103876264
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GCGCTGTCCGTCTCCCGCAGGAA
3' ss Score
11.54
Exon sequences
Seq C1 exon
GACGCAGGACTGAACGGCCGGGAGCCCCCAGAGAAGGAGAAGGGCCGGCGGCGCCTCAAGGAGAGCTTCGAGAACTACCGCAG
Seq A exon
GTGGGCCCGCGTGGGCGGTGGGTGGGGCTGCGGGCGGGGGCCTCATGCGAGCCCGCGCCCGCCTGCGCTGTCCGTCTCCCGCAG
Seq C2 exon
GAAGCGGGCCCTCCGGAAGATGCAGCTCGGCGCGCGGCAGGGGGAGGCGGACGGAGAGAACACCACGGGCAGCGACAACACCGACACCGAGGGCGCCTAGCCGGCCCCCCGTCCAGCCCTCCCCGTCGCGGGAGGAGGCGCGGCCCCCCCAGGCCGCCTCTTCGTCGGCGAGCATGGGCGGGTTCTGTGGGACGCGCACACGTGCCGCGACCTTAAAGTGCAACCTTGTCAATAAACTACCGCGGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006572:ENSBTAT00000008634:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=NA C2=0.939
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCAGGACTGAACGGC
R:
CTCGGTGTCGGTGTTGTCG
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development