GgaINT0125938 @ galGal4
Intron Retention
Gene
ENSGALG00000001889 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr17:7915980-7916303:+
Coord C1 exon
chr17:7915980-7916070
Coord A exon
chr17:7916071-7916152
Coord C2 exon
chr17:7916153-7916303
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGG
5' ss Score
4.74
3' ss Seq
TCACGCATTCCCGTTTCCAGGAA
3' ss Score
9.47
Exon sequences
Seq C1 exon
TTTTCCAGTTCGAGGAGTGCAGCTCAGCCCACGAGGAGCTGTCCGAGAAGGAGCGGAGGAGGATGAAGGACTGCTTTGAGCGTTACCGCAG
Seq A exon
GTCGGGCCGCATCCCGCCGCCCCCCCCCCCCATCCCGCGCTCCGTTCCCGTCGGGCTCCGTTTCACGCATTCCCGTTTCCAG
Seq C2 exon
GAAGCGCGCCCTGCGCAGAGCGCCCGCGGGCCGCCGCCCCGAGGCCGACTGGGAGCCGAGCACGGGCAGCGACAACACGGACACCGAGGGCAGCTAGGGGCCGGCCGAGCTTCGAGTTTGCAGCTGGATCCGTCAATAAACAGCTCTGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889:ENSGALT00000002925:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.906
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGGATGAAGGACTGCT
R:
GGATCCAGCTGCAAACTCGAA
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]