RnoINT0029381 @ rn6
Intron Retention
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3798347-3798736:-
Coord C1 exon
chr3:3798660-3798736
Coord A exon
chr3:3798575-3798659
Coord C2 exon
chr3:3798347-3798574
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCACACTGCGGGTCCCACAGGAA
3' ss Score
6.85
Exon sequences
Seq C1 exon
GACACGGTGCCCAGCAGCAGCGAGCCCCCGGAGAAGGAGCGGCGGCGCCTCAAGGAGAGCTTCGAGAACTACCGCAG
Seq A exon
GTGAGGGGCGGCAGGAAGGACGGCTGGGCGGGTGGATTACCTACGCTTACCTGCTCACAACCTGCTCACACTGCGGGTCCCACAG
Seq C2 exon
GAAGCGGGCGCTCCGCAAGATGCAGAACAGCTGGCGACAGGGAGAAGGGGATCACGGGAATACGACAGGCAGCGACAACACCGACACCGAGGGCTCCTAGAGGACCACGCCGAGGCTGAGCGTCTGTGTAATTGTGAAGGGATGCTGCGGGTTTTTTTACTGTACGCTACACATACGTTGTACAAGTATTAGAAAAAAATGCAGCCTAATAAAATGACCTCTGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470:ENSRNOT00000091484:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.970
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTCGAGAACTACCGCAG
R:
CCGCAGCATCCCTTCACAATT
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]