BtaINT0032431 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000505 | CCBL2
Description
Bos taurus cysteine conjugate-beta lyase 2 (CCBL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075370]
Coordinates
chr3:55145781-55146348:+
Coord C1 exon
chr3:55145781-55145857
Coord A exon
chr3:55145858-55146261
Coord C2 exon
chr3:55146262-55146348
Length
404 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTTTTCTTTTTGTTTTTCAGAAA
3' ss Score
12.48
Exon sequences
Seq C1 exon
ATGTAGACCTCTTGGATATGAAGGACAGCAATGAACCTTATGACTATAAATTCGTGAAATGGATGATTAAAAATAAG
Seq A exon
GTAATGTTTATTGGCTTTTGCAATATTGTGCTGTATGTTATAGTTGATTTATGAAGGAAGCCTGTTGACATGCTTTGAAAAATGTGAACTGTAGTTTTATTCCCTGATATTCTACTCACAGTTATTTGGAAGATTTTATTTATTTATTTTTATTTTTTGGCCACACTATGAAGTTGACAGTATCTTAGTTCTGTGACCAAGGATTGAACCTAGGCCCTTCTCAGTGAAAGCAGAGAATCCTAACCATTGGTTTACCAGAGAATTCTCTGGAGGATTTTAAAAATACATTTCTTTTGGAAATTCTTGTGGATATTTGTAAGTATCTATTTGCTTTTAATGTTTGTGCTCTAAAAATTAATATTTAAAGTGTACGTAGTTTTTATATTTTTCTTTTTGTTTTTCAG
Seq C2 exon
AAACTGTCAGCCATCCCAGTTTCAGCATTCTGTAATGCAGAAACCAAATCACAGTTTGAGAAATTTGTGCGATTTTGCTTCATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000505:ENSBTAT00000000643:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(6.5=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]