HsaINT0028677 @ hg19
Intron Retention
Gene
ENSG00000137944 | CCBL2
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:33238]
Coordinates
chr1:89408688-89409106:-
Coord C1 exon
chr1:89409033-89409106
Coord A exon
chr1:89408775-89409032
Coord C2 exon
chr1:89408688-89408774
Length
258 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGTTTCTATTTATTTTTCAGAAA
3' ss Score
10.44
Exon sequences
Seq C1 exon
ATCCAGACCTCTCTGATATGAAGAATAATGAGCCTTATGACTATAAGTTTGTGAAATGGATGACTAAACATAAG
Seq A exon
GTAATGTTTATTGTTCTTTGCAAGATTCTGTTATATTTTATAGTTAATTTTTGAAGGAAATCTGCTGGTATGCTTTGAAATCGATCAAATGTAATGTTGTTATATGATACTCCACTTGTGGCTTTTAAAAGCATTTTTCTTTTTGGAAATTATTGTGACTATTTAAAAGTATCTAGTTGCCTCTAGTATCTGTAGTACCAAAATTAATATTTGAAGTGTAAGTAGTTTTCTTATTATATGTTTCTATTTATTTTTCAG
Seq C2 exon
AAACTATCAGCCATCCCCGTTTCAGCATTCTGTAACTCAGAGACTAAATCACAGTTTGAGAAGTTTGTGCGTTTTTGCTTCATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137944-CCBL2:NM_001008661:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(6.2=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGACCTCTCTGATATGAAGA
R:
ATGAAGCAAAAACGCACAAACT
Band lengths:
156-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)