RnoINT0081191 @ rn6
Intron Retention
Gene
ENSRNOG00000043426 | Kyat3
Description
kynurenine aminotransferase 3 [Source:RGD Symbol;Acc:1359262]
Coordinates
chr2:248682347-248682973:+
Coord C1 exon
chr2:248682347-248682420
Coord A exon
chr2:248682421-248682886
Coord C2 exon
chr2:248682887-248682973
Length
466 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TCAACTTGTGTGCTTTGCAGAAA
3' ss Score
9.35
Exon sequences
Seq C1 exon
GTGTTGACCTCTCGGATGTGAAGAGCGATGAGCCTTATGACTATAAGTTTGTGAAGTGGATGACGAAAAATAAG
Seq A exon
GTACTGTTTACTGACCTCCCAGTTCTGCTACATAGTTTCTGTAACAGTTTACTGCCCTCCCAGTGCTGTTACATAGTTTCTATAACAATTACTGACCTCCCAGTGCTGTTACAAAGTTAGCTTATCAACCACCTCATGGATGTGCTTTGAAAGACACCGAACTCTAGCTTTGTCTCTCCTCGGTTTTATTTTAAAATGTTTACTTTAGCTTAGCTGTGTTGAGACAGTCTCATTACGTAGCGTTGGCATGCCTGAAACTAGCTCTGTAGACCAGGCTAGCCTCAAACTGTTCTAATTCTAACTTTCATTCAGATAGACCACTTAGGACTTTTTGAGGGACTTTAAAAATACTTTTTCCTTTTAAAAATCACTATGACCATCAGCAGTATATTTCTAATGTCGGTGGCCTGTGTCTCATGTGGAATGTGTGGAGTTTTCTCACAGCGTCAACTTGTGTGCTTTGCAG
Seq C2 exon
AAATTGTCAGCCATTCCTGTATCCGCGTTCTGCGACTCCGAGTCTAAACCTCACTTTGAGAAGTTGGTGCGGTTTTGCTTTATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043426:ENSRNOT00000067165:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(15.1=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]