GgaINT0038347 @ galGal4
Intron Retention
Gene
ENSGALG00000006188 | CCBL2
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr8:14089681-14090231:+
Coord C1 exon
chr8:14089681-14089754
Coord A exon
chr8:14089755-14090144
Coord C2 exon
chr8:14090145-14090231
Length
390 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATTTCTGTTTAATTCTTCAGAAA
3' ss Score
8.15
Exon sequences
Seq C1 exon
ATGTGGATCTCCCGGATGTAGATGAGAATCAACCTTATGATTATAAATTTGTCCGATGGATGATATCATCCAAG
Seq A exon
GTAAGATGTCCTAGTTATATTCTAGTTTTAGAAATGCTTTTCTACTGAAATCCAAAGCAGTGCAACCACGCTTATTCAAAACGTTGTTAGGTATTCATGTTATCTTTTGGAAATGATGTGGCTTTGAATATTGTTAAGCATACTGGTAATGTATTTTATAGGTTTGTGTTAAGTTCCAGCACTTGTTCTTTCTCTGCTTAAGTGCTAGTTGTAGAAAAAAACCTTTGAAATGTTTTGTCTAAGAAAAGTAATGTGGATTTCTTTAAGCCTAGTTAGCCAAAATGAAATTCAGCCTTGTGTTTTCCTTGAATGTTGGAAGAATTTTAGAAAATCATCCTTAGGACTGTTTTTAATATATATGTATAATAATATTTCTGTTTAATTCTTCAG
Seq C2 exon
AAACTCTCAGCAATTCCTCTTTCAGCGTTCTGTGGGCCCGAGACAAAAAGGCAATTTGAAAAATATATACGTTTTTGCTTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188:ENSGALT00000009984:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(6.3=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=PD(7.3=93.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]