BtaINT0032765 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44195183-44198584:-
Coord C1 exon
chr4:44198502-44198584
Coord A exon
chr4:44195393-44198501
Coord C2 exon
chr4:44195183-44195392
Length
3109 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
TCTGTTTTTCTGGGATCCAGCAC
3' ss Score
4.87
Exon sequences
Seq C1 exon
TTACATGCTCTGGGGAAACTTCCTGGAACCAGGATGGCAGAGTTAAAAGCCAAGTACACCTTGCTGCATGATACCGTGATGAG
Seq A exon
GTATGCTATTTACCAACGTGGAGACATACTTACTCATGCTTCTACTTCTTACTTGAAATGGGACCCATCTTATTTTTCATTTTCCCCAAAACAGACTCTGAGACCAAGATTTGAGTTCAAGCGGTTTAAGAACATTATCATGAGGGAGTGGGGAAGTGACACGGGGAAGAAAGTTATTCAGCTGGGGATGTGATAATCTTCAGGTTAACACTGCAGACAAACGGGGCTCAGTCTCACCGAGTGACCACAGAACACGCCTCAGAACTCTCCCACTGAAAGCACGAGAACACTGGTATATCTGTTCACTAATTTCCATCTCCCCTTGATCTAGGGTTGCTTCTAGGTGGGTGAGCCCCTGACACCTCTACCTTACCCTCTGAGAAGCCATAAGTTCCAATGGCCAGAGAAAGCTCTCGGGCAGAGACACACAGATGCTGTTGTTATATATGACAACTGTCCACCAATGCTACTGGTGGCCGCTAGAGTGGGCCTAGGTGACTCTGGTGAGGCACTGACATTCTCTGCTACAGGACACTCCTGAAAGATCCTCTCCTCCCCACCTTCACCATTCAGGAGGTGTAGGTTCTATAACAACTCCAGTCTATGTCTGCTAAGATTTCTGTCTTTACTTCTCACCTGTTCCTCCTATCTCCAGCCACTCACCTTAGCCCAGTTCTAAACAGCAGAGGTCAGAAGACTAGGCGACAATGGAATAATTCAACAAGGTTTTCTAAGCATGTGCAGTCAGCCATCGGGAATCAAGGGGGAAGGAGAGCGAAGAAAGAAGTGGAAATCTGTAGTCCTGCTACTCCCAAGTCCCCTCTTCCTTTTCCCCACCTCCTGCCTCATAGCTTTGCATGACGTCTTCATTAAAACCCAAGGAGAGACAGTGATAGACACTCCGTCCTCCCCCTCTGCCTCGCTCATATCCACCCATTACTCCTACTGCTTTGCTTGCCCAGGTATTTGGCTACTTTGAGGATGAGAGCCTGGGGAAGGAGTGAAGGAGAGCAGAGCTGCATCCCTATAGACCCTCCCCTGGGCTCCACTTCATACACACTCAGCTGCATCCTGGCTCCTAACCACCCTCCAGCTTGTCTCCTTCTCTTCCCCAGCCCCAAACCAAATTCTCACCCTCACCCCTATAACAGGGACTCCATTTCCCACAACTGATCCCAAATGCCAGCGTGTACACGCAGCTCTCAGGACTCAGGAACTTAGAGGATTTAGATGGAAAGTCTGGGGTGATCTTTTCAACATATTTCACACCACTTTACTGCGAGAAATTCCACACAGTTATCTGAGCCTCCTTGCAGATTGAAACACTTGTCACTCTCTGGATAGCTCTAACCTAGAGCCCCACAGAGCCCTGTGTGGTGCTGATGTGGCTGCCTCCTTGCCTGGCTCACAGCTCAGCTCCCTGGACTCCAGTGAGAGTCACGCAGGACCAAGGCCATGGCACTCTTTCTTCCTTCTTCCAGGCTGTGTCACAAAACCATTACTTCCCTTCTGCTACATTTTACCCCCTTCTGACCCCAACACAAAAGAGTTCCCTCTTTTGTGATTACAACGAACACTCACCACTCTCTCCCCACCACTGCCTGGTGGGTAGGAAAGACATGAAGATGCAGACTCCTCATTCTTGGTGCTGGGGCTGCAGCAGGGCAGATAAAGGCTGGAAATGCTGAACCGAAATTGAATGAGGTGTCCATAGAAATCATGTTACAGGAGCTGTTAAATTCTCTTCTGCTGATGCTCTATTTCAAGTTCACATGTGTAAATTACCATTTGTGTTCTGGCTGGAGCCGCAACCACTGTGTTTGCCTACTTTCTGAGGGCAAATGGGCTCAATGGCCCGAGACGATACCTTACAATTCCGTAGTTGAAGACTCATGTTAAGGATATCAGGTAACTTCATATATATACAGTATATACAAGGAAATGAATTGTAAGAAATAACTCTAGCATTCATGAATGGAAATTACATGTGTATCTTTATAGCTCTTGTTGCTATTTAGCACCTAACACAGTGCCTGAAACATCTGATAGCCCAATAAATGTTTTGCTGTTGAGTAAATGATGTAGTAAATACTGAGAAAATGGGTGGGGCTGGTAACTTCAGTCGAGACAGGCTTGATTAAGTTGTTGGGCATCTCTGCAAATGAACAGAACCCTGAAGAGTTCTCCTAGTGAGAAAAGTTGGTGGGGAGCATGCACACAGTGCTGCCTTTAAAACAGGAACTGGCAGGGTCTTGCTTCTGAACTGGAGAGACAGCAAATGCAAGGAGGGAGGATTTCTGAGAAAGAAGAGTCAGATCTGCTGATAAAGCTGGATCTGACACTAGCTTGCACCATAGGTCAGTGATTCCTTGAAGACACTGGAGAGTCCAATAAGTCCAGTTTCTATGCTCATTCAATTCTGCCTCAAGCCCCATGCTTAACCCTTTCCCAAGATAAGGCCAAAGCCACAGAATATACTTGGAATTGTAGGAACTGCTCTTTTCTGTGACATTCACATCTGTAGCCAGGCATTGAAGTTATGATCACAAATATGTAAATTAAGTACATAATTTTATAGAAGAATTTTTCTTCCTAGTTTCCTGGTAAAGTGTCATTAGAAAATTTAACTGTTTTTTCTTATTACTAAGGAAGAAAAGATTTTCCTTTAATCAGGTCATGAGAATCCACGAATTCAAGAAAGCCAGGGTTGCTAGGGCATTTGGAGGGAGAACCCACTCTTCTTGGTATTATTATTCTCACCCGCTGGAAGGTCATGATCAAATATCTGCTGGAAGGTCAAGTGCAAATATCACATTCCCATCCAACTAATCCTTTCTCTGTCATCTCCCACCATCTTGATCTAGACACGGGTGGCAGCACTTGTCAGCTGGTACTCCAGCTTCCTACTCATGTCTGCTCCCCTCGGCTAGGTGTGAGTTCCATTTGCCTTTAAGATCTAGTGCAATACTTGGCACAGAAATGCCACTGAATTGACCTGAACCCAGCATGGACATACTCCCTCCACACCTCACCAGACCCCCACAGGAGCTACCAAGGGCATTGAAGGTATACACTGCTCATTATGCAAATCTGTTTTTCTGGGATCCAG
Seq C2 exon
CACACAAGAATCAGAGGTCCAGCTGCTACAGGATGCCAAACGTTTCACTGAGCAAATACAAGAGCAGCAGTTTCACCTGCAGCAAGCTGATAACTTTCCACAGGCGTTCACCACCGAAGTTTCCAAAATGAGAGAACAACTTCTCAAGTATCAAAATGAATACAATGCAGTGAAGGAAAGAGAGTTCCACAATCAGTACAGACTGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341:ENSBTAT00000047247:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]