GgaINT0109130 @ galGal3
Intron Retention
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13721431-13727302:-
Coord C1 exon
chr1:13727220-13727302
Coord A exon
chr1:13721641-13727219
Coord C2 exon
chr1:13721431-13721640
Length
5579 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
AGTTTTTCTACTCAATGTAGTTT
3' ss Score
3.91
Exon sequences
Seq C1 exon
CTATTTTCTGCTGGAAAACTCACCAGCTCCAGAGTAGCTGAGCTGAAGGCAAAGTACAACCTGCTGCATGAAACTGTGAGAAG
Seq A exon
GTACAATATTTACAGTTTTCTAAGTGTATCTTCACTTGCTTCTGTGCAAATAATGCGTTTGTCAACTTACCCCTTGTCTTTTTTAGACTTTGAGTAGCCAAAGATTACATGCTTAAAGTAAATTTCTGGTTGAGGCTGAATTATCACTTATAACTTTCTTACAGTGACTACTTACACTCTGACCGAGAATAAAAAACAATATTGTTTAATATGAAGATCCAAGGGGCACTTGAATGCTCATTTGGACAACATATTTTTTAATATAAACATAATAAAGGCAATTGAAGGAAACACAAGCTGCAATAAATGATACACAAGTTTAACATTAAGATATATTTGAATATTATGTAACCAGAATTGTAATGTATTCAAACCTGCTGAGCAAATACATTAGAGAGAATTAAAGAAGCTAAAAGGCTGTTTCTAAGAAGGAAATCAAGATAATTCCACATCTAAATAGGGATTAATTTTACCCTACGAAAATACAGTCACATCAGACAGGTCTGATAACAAATATAAAAGGTTATAACCTGAAGCTTTAGAGTCTGAAGTTAGGTGTGGTAGCTGTGAGTCTGCCCTGCTCTGGTGAGACAAGAGAAGGGATAGTGGTTGTAACTGAGTGCCAGGCTTGAGCACTTCCTTGAGTGAAAGGAAAAGAAGAGTGAATAGTACTGCATTACTGGGCTGAATAGAGTGGCAGGACTCCAATATTTGCAATAGTCTTTTTGTGACTAATATGTTTGATCCTGAAAACACAGGATCCTAAAGTTAGAAGTCTTATAGTTTCATCCTAATAAAATGGGAAGCTAGAATAAGGCTTTGGCTGTGTCAAAAGTCATCTGACTTTATTCAGATCAGTGCACGTCAAATATTTTGGAGAAACAACATTTAAAGCAGTGCTTCTAAACCAGTTCAATGCCATAGAAGCTCCAAGGCTGATGCTCAGAGCTAAATATATGATGTGGGCTTTGTTTTAGTTGACTGAAAATGCTTCTACCATACCTGAGATGAAGGAGAAATCCAGTAACTACTGAACATGATTTACATTTAGCCAGTGTTAATTTGAAACCACTTTTTGGCTGGAAAAAATGCAATCGTGTCTCTACTTACTTTATTTTGCATATTTTCATAGCATTTTTTTAAATATAAAACATACTTTTTTATAATGGCAACTTTTTTTTTTTTTTTTTTGGAAGGTAGAATAGGTGGAATATTGCCTGAGAGAAAACAAGACTGAACTATTTTCTTTCATGCATAAAACTACTTTAAACCATCTGACTACTTTAAATCATGCCCTAGAAGTGTTGGATGATAGATTACAGCCCTCATTCCTTTCATTGTTCTCACAGAAGTATGCAATTGCTGTACATCTGCAAGAAAGTCAATTGGAGAGAGTCACAAAGCACTCTACTTGGATTAGCCACGTGTCAAAGCAAAACACTAACACATGAATGCACTAATGCTACTTTCCACAGATTAATTCCTCCTACTACTGGAAGAAAGCAAGGGAAATCAATAATCAAAAATGTATCAGAATCTCTGCTATATTCTGAGGACTTTCCAAACAATAAGGGCGAGATTCACCTACCCACATTTCTATAGATACGCACAGCTGAACTATGTACCTAGAGGCCATTGATGTTCAATAACAGGAGCCATACACTTTCTCCTTAGACAGATATCTGCAGGCATCTGTTCTTGTCCATTGACTATAACCAGAGTCCAGGTGATAAGTCAGTATAAGTTTATACTGTTGGTCTCAGTCAACTGAGGTGAAACCTTGCCCACCCTTCCAAAAAATCTGTTCTGAAGGCAGAAAAGTAATAGTTCTAGTGTGCTTATGACTCATGTCAAGCTCTTTTCAGTCTGTACTGAGCAAGACCTTTTGGGATCATCTATGAGGCATTTGTCCTTTTCTTACAATCATTCAGAAGAATCAACATAAATTTTTAATTTTTAGTTCTTCAGTAAAACTCTGTGGATCAATACCTCATTTTTCAGCTATTACAGTTGAATTTCATCACTTAATTGGTCACCAGGGCAGGATGTCTTTTGTTTACCAGCACTGGTAAATGCTGTGCAGAAAGAAGTGATGCTTGGTGAGAAAGTCTTCAAACTGAGTGTAGTTCTTTCTTTTAGTCAGTGATATAACCTAAGGGAAGTTCAGACTGAATATTAGACTGGACTAGACTAGACTAGAATAGTTCAGTTGGATGGGACCTTAGAGATCAACCAGCCCAGCTGTCTTCAGGGCAAACAAAAAGTTAATGAGGACATTATCCAGATGCCTCCTGAACACTGATAGGCATGAGGCACCAACCACCTCTCTAGCAAGCCTGTTCTATTGCTTGGCCAGTCTCACAGTGAAGAAAGTTTTCCTAAAGTCCAGTCTGACCCTCCCTAGCTTGTACTATTACTGTGCTTCCTGTCATTAATTACCAGGAAATGGTAACTAATAAATTTAGAAAGAGTTCTTCACCAGAGGCAGGTAGGTGGGCATGGAAAAGGCACCCCAGGGCAGTGGCCATGGCTTCAAGCTGTTGGAGTTCAGGAAGAGTTTGGACAAGGCTCTCAGACGCTGGGTTTGAATTTTGGGTGATCCTCTGTGGATTCAGGAGTTGTACTCAGAGATCCTTGTGGGCCATTCCAACTCGGGATGTTCTGTGATTCTATGATTTTATGAATACAATTTTACATACAACTGTGTCAGAGGGAACAAGCTGAGATTTATGCACCATAAACAGTGTAAATCCCTGTGACAGTTCTGTCAAAACAATGTGGGTGATTTCTTGGTATCTAATGCAGATCTGCTAATGTGATGAGTGAAATTAATAAGTGTGCAGATCATGTTAAGGCTGCTGATGCAGTACACACTGGTTAGCGCATACTGTGTTCCTTTCCTTGGTGGTAAATACTTCATTATTTCTTGGTTTCAGTTTTACTTAATTTGGTATTCAGAAAAGCTGAGAGATGTCAGCTGGCAGACAAGATCCTTGACACACTGAGTCAGGCTGTTACACGTTGCTGAAAGTCTGCTGCACTACTGAAATTCTGCAAACAGGCTGCCTTCTCTTTCTGCTGTTGTCTCACCCATCTGCTTTGCAGTGAGGCTGCATCTGAAGCTTAAGTACCTGCACTCATATTTCATCCTAGAAAACCTCTTTGGCCAAACAGACGTGTGGCTCAATTGTGAGTTGCACAAAAGGATAGAATCATAGAATGGTTTGGTAGGAAGGGACCTTTAGAGGTCACCTAGTCCAGGTCTCCTGCCATGGGCCAGGACATCTCTCCCGAGATCAGGCTGCCCAAAGCCCAGTAAGGAACGAAATATGAATATTCTCACACAACAAGCTGTAAGAATGTAATGATACTTCATTGACAGTTTTGGAATCTTATCTTCTTAAGTCTAAATGAAATTGTTTGTCACTTCACTAATGCAAAAGTTGCTACATCAGACTGGGCAAGCATATTTTTGCACACATGGGGTTCTAAATATGTACACTGTGTAGATTTCCAATCATTTCTTCATTGGAATTTAAACCTTCACATGAAAAAATACTGCTGGCAAGTATAAGATCTGGTCTAGATTCAGTAGTTGATTCTGATTTATTAAATTCTGAATTTATTTTTCTTTACATAATCATGAAAAAAAGGAAATCATAAGAATTTTGTTTTTATGGAAGAACTTACTTTTAATGTAATTTTTATATAAAATTTATGTTTAATGTAAGAATTATTTTATAAATGAGTGTGTATTATTGCATCCGATTCTGTTTTCTCCCCAAATCAATTTCATTCTTTTTGACTTATTTAAGTAAGATCTAAGCATAATTTAGGATTTTGCATAGATCTCTCAAACTATTTTCCCCTTGAAATATTATTATACATCGTCAATAAATACATCAAAGCATGAAGTTCATGATAAAGACACACCCTTGCATCCTGCTTGTCTGTGGTTTTCTTATTTTCTGCTCTAAAAAAGAAAGTGGTTATTTAACTAGAGATGTTAAACAAAATAAAACTCTTCCTTCTTTGTTCTTTCAGCCATATGCCGTGTAGTTAGTTATGTATTTTATGTTTTACTGTTACCATCTGAGTTCTGTTCTTCGGTGTGATGTAATTTTGTTGTTACTTATCTTGTAGTGTACTCACAGTTGTCATCTTTGAGCTAGAATTTGGTATAGAGATTATCGGTATAGGAGATTATAAATTTTAAAAAATAATAAATTACATTTTTTTAATTAATTAAGGGCAAGTGATTGAGTTCTTTATTCTTCCTCATTACTTCTTACTAACTGTAGCATGCCATTGTATAAAGTTTATGACTTAATAATATTGAGAAGGCATGGGCAATGGTAGCTATAGCAAGAAGACTAAGTTTGCATATCAAACAGTGTATAAGAATTTTCATGCTGCAGTTCAACAAGACTCTTCCATAATTACCAGTGTATTTTAATAACAGCTCTTAAGATACATCATTTGGCTATCACCATGCAGGCTCATAAACACACTGTGAGTATCAGCCTCTTATGACTGACAGAATATTACAATTTGTTGTTTCTGTGAAGCCAGACTTTGGTGGCACAGCTGATTTCAGATAATCAGTCAGTTCCATTAATATGTCTCCAGAGAAGTCCATAAATGTAGTTGCAGCCTGAGATCACCAGGTGAGCTGCTTCAGCTGCTGGTAACACTCCAGCGACAGCAGCACATAGCTCAGCACTGGGTACATGCCCAGGTGTTAGCTAAGAACACTGAGGCAATGTACAGCCCGGGCTGGGCCCTGTACCGGTGAACACTGCCCTGATGCTGATCAGCACACTGATGTGATAAAACGTTTTGTGTTGTAGACCAAATCCCTTTCTTGAGTTCTTAAGACAGTAACTTGTGCTGAAAGGGGTGCATTTACTCTCTATGAATGGGAATTTTACTACTGAATGTAATTGCTTGGGATTTAAACCTAAATATTGGTTTTCATCTTCATACTTGTCTCTGCTGTAAGAGGTCATGTAGGAGAGAAAGTGCATTTTTTTCATGCCAGGAAACAAAGATTCCAGATTTTCACTTCCATCCTTTTCTACACGCTGTGTAGTTACTGAAGCTAAGCAGTAGAATGTTGCTTATCCCTCCAGAGTATTTCAGTTATTCGGAATGCTTTCCGTGTAATCCGTGAGTTGAACCACTACCAGATACCACACAACCCTTAGGATAAAAAGAATTTCTGTCTCTTCACTGATTCTAGCAGGTGATAGATAGAATAACATTGAATAACTTGGACTAACTGATCATCTTTCATCTGGTTAAGATTAGATGAGATTAGATGCAGAAAATCCCCTTTCAACAAGTCTCACTGTTCTCATGAGGCCATAGAACAGCGCAGGTTTGAACAGACCTCAGGAGGTCTCTGGTCCAACCTCCTGTTTGATCAGGGTCAGCCATGAGATCCAAGCGTATTGCGCAGGACTTAATCCAGCCTCATCTCCAAAACATTGCTTTATATACTACAGAAATGTAAATAAATGTAAATATAGAGCTTGTGCTTCCTATTGCTTAGATCTAAGTTTTTCTACTCAATGTAG
Seq C2 exon
TTTACAGGAATCTGAGATCCAGCTGTTGCAGGAAGCCAAACGTCTTAGTGTAGACCTGGAACAGCAGCAGCATGAACTGGAAAAAGCAGAACAGTTCCCTGAAGAATCTTCCAGTGAAGTCTGCCGAATAAGGCAACAGCTTCTTAATTGCCAAAATGAGTACAACGCTATTAAAGAAAGAGAGCATGAAATTCAGTTCAGGATAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309:ENSGALT00000013526:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]