BtaINT0032843 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008201 | CCDC151
Description
Bos taurus coiled-coil domain containing 151 (CCDC151), mRNA. [Source:RefSeq mRNA;Acc:NM_001102047]
Coordinates
chr7:17032144-17034185:-
Coord C1 exon
chr7:17033839-17034185
Coord A exon
chr7:17032266-17033838
Coord C2 exon
chr7:17032144-17032265
Length
1573 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
CCCACCTCACATGACCCCAGAGG
3' ss Score
4.58
Exon sequences
Seq C1 exon
GAGCGGTCGACAAGTGCATTCCCAGAGCCCGAGGAACCTGAATTGACGGATCCTAGACAGAGGCAATTCCCCTGAGCCCCAGAGGCCCTCGACCTCAGCCCCAATCATGACGTCTCCCCTGTGCTGGGCGGCGGCCTCCAACGCCATGCCTTCTCAGGACCAAATTTCAACCCCCTCCAAAGTCAAGGCCACTCAAGTTCAGCTCAAGCCCTACCGCTCTCGAGGCAAGGGCTTGGTGCCTGTCTGGCACTCACTTCATTCCAAGGCAGGACCCTTGCATGCCAGCGAGGGGAAGTCCGCTGTGAACATGCAGGTGGCTGAGTTACAAAGGAAGATACAACTGTTAG
Seq A exon
GTAAGATGACTCCAGAGGGCCCAGAATGGTCAAGTCAACAGCCCTCCGACCTGGCAGGAGTTCTTTCACTAGCATTCGTCCAGGTGTCCAGTATCCGGAGGCAAAAATTCATGCTTGGTCATGGTTTTCCTCATCTTATACAACTTTTCCTGAGCTCAGAACCGAGTGAACTGTATTTCATACTTTTACGTGTGTGCGTGCCAAGTCACTTCGGTCGTGTCTGACTCTGTGTGACCCTATGGACTGCACCCTGCCAGGCTCCTCTGCCCATGGGATTCTCCAGGCAAGAATACTGAAATGGGTTGCCATGCCCTTCTCCAGGGGATCTTCCCAACACAGGGATCCAACCCACTTCTCTCACGTCTCCTGCATTGGCAGGGGGGTTATTTTACCACCAGTGCCACCTGGGAAGCCCCTACTTTTATGTAGTTTCAACTTTTCTATCATGCATGGGAGGATGAAGGATATAGATTCTAGAGGCAGATTTTCTGGGTTCAAATATACTGGCTCTACGTGTGCTATTAATAATTGTTTGATCTTCAGGGACCAAGAATAATGTAATTGCTCTCAGTTTGTCCAACCATTAGACGAGGATAGTAACAGTACCACCCCATAGGTAGTTGAAATGTGTAGCGTGCTTAGAACAGTGCCTGGCACAGAGTAATACTATGGAGTGTGAACCAGTGGTTCTCAATGGAATCGGGCTATTTTGCTCCCCAGAAGACACTTGGCAATGTCTGGAGACATTTTGGTTTGTCACATTGTTTGGCGGCGGGTGGGGGGGCGGGTTGTTACTGGCATCTAGTGAGTAGAGGTCAGGGATGCTGCTCAACATCTGATGATGCACAGGACAGTTCAACACAGCAAATAATCATCTATCTCAAGTGTCAGTTGTTGCTTTGTGGTTAGGAGGTAGTGTTGCATAGTGGTTGAAAGTATGTGCTGGGGAGTCTGACTGCTTGTGAACTGGAACAGTCTAATACGCATGAGCCTTCTCATGTGTGAAATGGGTATAATATGGATATGGGTATGTACATACTGGCACATCCTATGTGATACCTAGAAAATGATTAGTCCATCCCTGGCTTTCCAGTGGTTAAGATGCTGTGCCTCCACTGCAGAGGGTGTGGGTTTGATTCCTGGTTGGAGAACTAAGATCTCACATGCAGTGCAGTACAGAAAAATAAAAGAAAATGATTAGTCCAGCATCTCTGCATGTGTGCTAAGTCACTCAGTCGTGTCCAACTCTTTGCAACCTCGTGGACTGTAGCCCACCAGCCTCCTCTATCCATGGGATTTTCCAGGCAAGAATACTGGAGCCGGTTTCCATTTCCTACTTTAGGGGATCTTCCTGGGCCAGGGATCGAACCTATGTCTCCTGAATCTCCTATACTGGCAGGTGGATTCTTTACCACTGAGCCATCTGGGAAGCTCCAGTCCTGCATCTAATACATAACAAATGCTCAGAGTAAAATATTGTTATACTGTTGATACCTACTACAAGGTCTTCCCTCTGGGAAGTGCCTCCTCCCGTGATGCTCTGCTTCTGCCTGCCCACCTCACATGACCCCAG
Seq C2 exon
AGGGTGACCGGAAGGCCTTTTATGAGAGCACCCAGTGGAACATCAAGAAGAATCAGGAGACCATTAACCAGCTCCGCGAGGAGACCAGGGTACTGCAGCTACAGTTGACAGCCCTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008201:ENSBTAT00000010785:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=NA C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCCAATCATGACGTCTC
R:
TAGCTGCAGTACCCTGGTCTC
Band lengths:
353-1926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]