RnoINT0030548 @ rn6
Intron Retention
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23010060-23014499:-
Coord C1 exon
chr8:23014120-23014499
Coord A exon
chr8:23010182-23014119
Coord C2 exon
chr8:23010060-23010181
Length
3938 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GTGACCTCTGTCTGCCCCAGAGG
3' ss Score
8.54
Exon sequences
Seq C1 exon
GATGCTTAGAGGCCCGTAGCCAAGCAGTTAGCAAAAGTGCATTCCCAGAGCCCAGGGAACCAGCACTTAGGATCCTGGATTGAAGAGGCCAAATTGTAGTTACTCTCCGACCCCTTAGAGACTTTCTGACCTTAACCCGATCACCATGACGTCTCCCCTGTGCTGGGCAGCCGCTACCAGCACGGTGACTAGCCAGGAACCAGTTCCAGCGCCCTCTTCCAAAACCAAGGGCAGTAAGGTTCACCGTCCTCGAGGCAAGGCTATGGGCAGGGCACAGGCCTGGCCTGCACATCATTCCAAGACAGCAGCCTCCTTCCAATTGATGAAGTCTTCTGTGCAAGCACAGGTGCTTGAGTTACAAAGAAAAATCCAACTGTTAG
Seq A exon
GTAAGATGGCTGCAGGTGGCACAGAAGGATCGGGGATCAACTGTGCCCACCCGATCTTCTGAGTAGGCACTATGTGGCAAGTGTTTCTCCAGCGTGAGTCTAGCTGACCAACTTGATGCAAACCCTCAAATTCGTCTGTAATTCTCATCTTTCTTTCCCATTTCTTTATAATCCCACCTCTTCTAATGTGAATATGGGTAGATGAAAAGCACAGATCCTAGGGTTTGTTTTTCCTTCTTTATTGTTCTGTATTGTGTTTTTGTGGACAGAGTGCAGTACTCTCAGATGCCTAAAGGCATTGGATCCCTTGGAGTTGGAATTACAAGTGGTTATGAGCTGACCAGTGTAGGTGCTTGAAACTAACCCTTAGGCTCTCTGCAGGAGCAGCAAATACCCTTAACCAGGAAGCTATCCCTCCAGCCCAACTTTTATTTATTCATTAAATTATTTTTGAGAGTTGGCCTCATGTGGCCCAGGCTAGCTTGAACTCTAAGGAGACCTAGCTTCACCTCTTGGGTGATAGCATGTGCCACCAGGCCAACATTATAAGGTGCTGACGCTGGGACCCCCAGGGCTCTATGCATGCTCCTCAAGCACTTCGCTGAGTTATGTCTTCAGCCCCAAGAGAGTTCCCTTCTCTGGAGTCTGAATCCTTACTCTGCATATTAGTTGTTTGATCTTGGGGGATTCGGAGTCATCTAATTTTACTCAGTTTTGCCATTTGTAAAACGGGCACAGTAACTCTACAAGTAGGACTTGACATTCACAAAATGCTCAAATAGCGCATTGTTAAGTAGTAGGAAAGTGGAAACTAGTGGCTTCAGTTGGGGGAGATAATGCTACCCTTCTCAGAGACCAATTAGCAATGGCTACAGACTTTTTTTGGTTATCATTTTGCTGAGTGCAGGAGGGTAACTACTTGGGTTTAGTAAGCATAGGCAAGGAGAAGGCTTTATATGTTATTAGGCCTCCTAATACAGCCCCACAGCAAAGAATTATCAAGACCAAATATTGCTTATGCCAGAGTTTGGAAAAGCCTAGTGTGATTTTGCTCTGATTATTAAGAGGAAATCTCAAACCTAATAATGGTGGTTCACAGCTTTAATACCAGCACTCAGCAGGCAGAGGTGGGCAGATCTCTGAGTTCAAAGCCAGCCTGCTCTACAGAATGAGTTCCAGGAAAGCCAGGGCTATACAGAGAAACCCTGTCTCAATAAAACTAAAATAAATAAATACATAAACAATAAAAACACTGTCAATTGGACATGGTGGTCCATGACTGTACTGAAGCCCTTGGGAGGCTGAGGTCAGATTATTGCCATTGGTTTGAGGACAGTATTGGGTATCTAGTGAGTTAGAAGCTATCCTGGGCTACAGAGTAAGACCCTGTCTGAAAAAGAAGTAAGAGAGGAAGACCACCAAGGAAGCATAGGTCAGCAAGATGTCTCAACAAATGAGGACACTTGCTGCCAAGCCTGATGGCCTGAGTTTGTTTCCGGGAACTTTGCACTCTGACCCTCCTGCCTTCATCTTTCTCGTGCTAAGAGGGAAAAGGTGTGCACAAGTGCGTTACCTGATTCATAGGATACTACAAGTTGATATTTTCATCCCATCATAAAGTTAGGGGCTGGGGAGAAGACTTTGTTGGTTTTGTTTGTTTGTTTGGAGACAAAGTCTCTGTGTAGCCCTGGTCACCCTGGAACTTGCTTTGTAGACTTGGCTGGCCTTGAATTTAGAAACCTGCCTGCTGGGGTCTTCTGAGTATTAAGTCGTGCCACGACACTGGCTTGCTTATTCATTTTGTGCTGCTCATGATGAGACGCAGGGCCTCATGCAGACTAGGCATGGGTTACAGACATCACTGTATGGGTTTCACGCTTTAAAAAATATTTTTTAAAATCTTATACATGTGAATGTTTTGCCTAAATGTATGTCTGTGTACCATGTGTATTCCTGGTGCCTTTGACCATAGGAAGAGAGTGTCAGATCCCCTGGAAATGAAGTTACAGAGTGTTGTGAACTGCCTTGTGGGAGCTGGGAAACAAACCTCTGGTAAAGCTGTCCTCAACCACTGAGTCATCTCTCTGGTCTCTGACTTTTGCTTTTTGTTTGTTTCTGTTTTGTTTTTCGAGACAGGATCTTATTGTTTAGCCCTGGCTAGCCTCTAACTCACAGAGATCTGCCTGACTTTGCCTGATAAGTGACCCACCACACCTATTTAGCTCAGAAGGTTTTTGATTGAGGTAGAATAACTTAAACATGTTTCTGGGATACATTGTATCATAACTAGATTGTGGTAATTGGTGTTGCCATTCTCAGACATTGTTAATGTTATTATGTGGGACAGATAGTCCTTTGTGTAGCTATTTGGAAATACATGGGATGTTTTCTACTGTTATTACTCTACCGTACCTTAGGGCATCAGAATTCTTACCATGCACAAAGTAAAATATCTGCTCTCCACAATCAGGGACCAGCACACTGTTCATTGTCTTGGTGGTATATATCAGGAGGCTGAGGCTGAGGTAGAGGCCTAACTACATACTGAGATCCTATTTAAAGAAACCAAACAAAAGATAGATTGCAAAAGGTCTTGAGTGGCAGGAATCTCAACACTTGAGACTTAGAGACGGGAAGATCAGGAGTTCAAGGCTAGCCTTGGCTACATAAGTGAGTTACCGACCTAGGCTATAAGAGACTTTCTCTCTGAGAAAAGCAAGACCAAAGAGGGTAATGGTGGCAGAGAACTGTCTACACAGTTGTGAGTGCTTGCTTCAAAATCCTGCAGACCAGAATTTCAATGGCAGCACCCACATAAAAAGCTGGATGTTCCTGTAAATGCTTCTGACTTCAACTCCTACTTGGGTAGAGAATGGAGCTTCTCTGGGGCTTGTTGACTTTCAGCCTAGCAGAGATTCCAGCCCCACAGTCACAGAAAGACCCTACTTCCAAAAGGAATGGGTGGGGAACCAAAAAGATGAATCAGCAAGGAAGATACTGCTCTTACAGAGGACCCAAGTTCAGTTTTCAGCACCCATGTGTGGCAGCTCACTACCACCTCTAATTACAGCTCCAGAGAACCCATTGCCCTCCTCTTCCTCATCTTCTTCCTACTCTTCCTCCTCCTCTTCTCCCTCCTTTTCCTCCTCCTCTTCCCTCCTTTTCCTTTTCTTCTTCCTCCTCTTCCTCCTCTTCCCCCTCCTCTTCCCCTCCTTTCCATCTTCCTCCTTTCCCTCTCCTCTTCCTCCTTTCCCCCTCCTCTTCCTCCTCTTCTTCCTCTTCCTCCTCTTCCCCCTCCTCTTCCTCCTCTTCTCCCTCCTTTTCCTTTTCCTCTTCCTCCTCTTCCTCTTCTTCCCCCTCCTCTTCCCCTCCTCTTCATCTTCCTCCTTTCCCTCTCCTCTTCCTCCTTTCCCCCTCCTCTTCCTCTTCTTCCTCTTCCTCCTCTTCCCCCTCCTCTTCCTCTTCTTCCTCTTCCCCCTCCTCTTCCCCTTTCTCTTCTTCCCCTTCCCCCTTCCTCTTCTTCCTACTTCTTTTCCTCCTCCTCCTCCTCTTCTTTCTACTTGTCTTTTCCTCTTCTCCTCCTCTTTCTCCCCTTCCTCTTCCACCCCCCCTCCTCCTTCCCCTCTTCTGTAAAAAACTTCTGGATCTGTAGCTCATCTAGTAGGGTGCTTGTGTGGCACATTTCAATCCCAGCTCTTCATACTGGATGTGATATGACAGATGCACATCTGCAATCCCAGTTCTTGGGGGTCAGAGGGATGAGAAGCACAAGCTCAAATGAGCCAATGGCTCTTTGTGGCCAGCCCAGGCTACATGAAACCCTATCTAAAGACAAAACTAAAATAAACAAACAAGAAACCACCACCACTACCAAATGGGTCTTCTCTCTGGGAAGTGCTACCCACCTACCTAGTGACAGTGACCTCTGTCTGCCCCAG
Seq C2 exon
AGGGTGATCGTAAGGCCTTTTATGAGAGCTCACAATGGAACATGAAGAAGAACCAAGACACCATCAACCACCTCCAGGAGGAGACCAAGTCTCTCCACATGCAGCTAAAAGACCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263:ENSRNOT00000017820:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=NA C2=0.415
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079166=TraG_N=PU(21.4=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]