MmuINT0030495 @ mm9
Intron Retention
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21802489-21807078:-
Coord C1 exon
chr9:21806690-21807078
Coord A exon
chr9:21802611-21806689
Coord C2 exon
chr9:21802489-21802610
Length
4079 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
GTGACCTCTGTCTGCCGCAGAGG
3' ss Score
9.43
Exon sequences
Seq C1 exon
ACTTAGCAACCGGGAGATGCTAAGAGGCCCGCAGCCAGGCAGTTAGCAGAAGTGCATTCCCAGAGCCTAGGGAACCAGCGTTTAGGATCCTGGATTATAGAGGCCAACTTGTAGTTATTCTCCTACCCCTTAGAGGCTTCCCGACCTTAACCCGATCACCATGACGTCCCCCCTGTGCTGGGCAGCCGCGACCACCACGGTGACTAGCCCGGAGCAAGCTCCAGCGCCCTCTTCCAAAGCCAAAGGCAGTAAGGTTCACCGAAGCAAGTCTATGGGCCGGGCACAGGCCTGGCCTGCACATCATCCCAAGTCAGCAACCTCCTTCCATGCAATGAAGTCTTCTGTGCACGCACAGGTGCTTGAGTTACAAAGAAAAATCCAACTGTTAG
Seq A exon
GTAAGTATGGCTGCAGACTGCACCGAAGGATCCGGGATCAACCGTGCCCACCAGGTCTTCTGAGTAGGCGCTATGTGTTTCTCCAGCACGAGTCTATGTGACCAACTTGAAACAAACACTCAAATCTTATCTTTCTTTCCCATTTCTTTGTACTATTACCTCTTCTAATGTGCATATGGGTGAGTGAAAAGCACAGATTCTAGAGTTTGTTTTTCTTTATTTATTGTTCTGTTTTGCGTTTCTGTGGGCAGAGTGCAGTACTCTCAGATGCCAGGAGAAGGCATTGGATCCCTTGGAGCTAGAGTTACAGGTGTTTATGAGCTGACCAATGTGGGTGCTTGAGACTAACAACCTTCCTCGCTCTGCAGGAGCAGCAAATGTCCTTAACCACTGAGCCATTATCCCTCCCACCCAAATTTTATTTATTTATTAAATTATTTTTGAGAGTTAGCCTCATGTGGCCCAGGCTAGCTTGAACTCAAAGGAGACCTAGCTCCACCTTTTTGGGTGATTGGCATGTGCCACCATGCGGGCATCATGCGGTGCTGAGGCTGGAACCCAGGGCTCTATTCATGCTACTCAAGCACTTTGCTGAGTTATATCTTCAGCCCAAAGAGAGTTTGTTTCTCTGGGGTCTGAATCCTTGCTCTGCATAAAAGTTGTTTGATCTTGGGGAACTTAGAGTCATCTAATTGTACTCAGTTTTTCCACCTGTAAAATGGGCATAGTAACTGCACAGGTAGTACTTGACATTCATAAAATGCTCATATAGTGCATTGTTAAGTAGTAGAAAGTAAAAACTAGTGGCTTCCCTGGAGGGGGAGGAGATAATGCTGCCCTTCCCAGAGACTATTTAGCAATGTCTGCAGACTTTTTTATCATTTTGCTGAATGCAGGAGGGTACTACTCCAGTTTATTAGGCATAGGCGAGGAGAAGGCTTTACATGTTATTAGGCCTAATACAGCCCCCACAGCAAAGAATTATCAAGACCAAATATTGCTTATGCCACAGTTTGGAAAAGCCTACTGTGATTTTGCTCATATTATTAAGAAGAAATCTTAAACCTGATAGTGGTGACATACGTCTTTTTTCTCAGTACTCAGCATGCAGGAGGCAGAGGCAGGCAGATCTCTGAGTTCAAGGCCAACCTTGTCTATAGAGTGAGTTCCAGGACAGCTAGGGCTACAAAGAGAAACCCTGTCTCAAAAAAAAAATGAAAATAAATAAATACATAAAAAATAAAAATACTGTAAATTAGACATGGTGGCCCATGTCTGTATTGAACACTTGGGAGGCTACGGTTGGATGATTGGCATTCGTTTGAGGACAGTATTGAGTATCTAGTGAGTTAAAAGCTAACCTGGGCTACAGAGTAAGACTCTGTCTGAAAAAAAAGAAAGAGAGGAAAGAGAGGAAAGAACAAGGAAATGTAGGTCGGCAAGATGTCTCATCAAATGAGGACATTGCTACCAAGCCTGATGACCTGAGTTTAGTCTCCTGGGACCTTGAATTTCTGATCCTCCTGCCTTTACCTTTCTCATGCTAAGAGAAAAAGGTATGATCAAGCATGCTACCTGATTTATAGGATGCTAGAGATTGATATTTTTATCCCATAATAAAAGAAAGTTAGGGGCTGGAGAGACAATGTTGTTGGTTCTGTTTGTTTGTTTGGAGACAAGGTCTCTGAAGGTAGCCTTGGCTGCCCTGGAACTTGATTTGTAGGCTTGGCTGGCCTTGAATTTAGAAACCTGCCTGCCAAGGTCTTCTGAGTGTTGAGGCTGAAGTCGCGCCTCCACACCGGATTGCTTATTCATTTTGTTCTGCTCATTGCTCAAGATCACACTCAGGGCCTCATACAGACGAGGCATGATCTACAGCCGTCACTATATGGGTTTGCTCTTTTAAAAAAATACTTTTTTATCTTATGCGTGTGAATGTTTTGCCTAAATGTATGTCTGTGTACCATGTGTGTTCCTGGTGCCTTTGAAGGTAGGAAAAGAGTATCAGATCCCCTGGAAATGAAGTTACAGACCATTGTGAACTGCCTTGTGGGTGCTGGGAATCAACCTCTGGTAAAGCTGGCCTCTTAACTACTGAGCCATTTCTCCGGTCCCTGATTTTTGCTTTTTGTTTGTTTATCTTTTGTTTTCTGAGACAGGATCTTATTGTATAGCCCTGGCTAGCCTCCAACTCACAGAGATCTGCCTGCCTTTGCCTGCTAAGTGACCCACCACATCTATTTAGCTCATAAGGTTTTTGATTGATGTGGAATACTTATACATGTTTATGGGATGCAGAGTTGTATTATAGAACACTGTATCATAACTAGATTGTGGTAATTGGCGTTGTCATCATCAGACATCACTGATATTATTGTGTGGGGCATATAATCCTTTGTATAGCTATTTGGAAACACATGAGATGTTTTCTGCTGTTATTATTCTACTATGCCTTAGGGCATCAGAATTCATCCCATGTGTACCCTCTCTCAACAGTCAGGGACCATTACACTGGCTTTGTGGTGTATACCAGGAGGCTGAGACTGAGGCTGAGGCAGGAGGACCCAGGTAGCCTGAGCTACGTACTGAGACCCTATTTAAGGAAACCAAGCAAAAGATGGATTGCAAAAGAGTTTGAGTACCAGGAATGGTGGGGCACACCTAGCATCTCAACACTTGGGACTTGGAGACAGAAAGATCAAGAGTTCAAGGCTAGGGCTGGTGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTGACACCCTCTTCTGGTGCATCTGAAGACAGCTACAGTGTTCTTAGATATAATAATAAATAAATATTTTAATTTAAAAAAAAAGTTCAAGGCTAGCCTAGGCTACAAAAGTGAGTTCCATACCAGCCTAGGCTATAAGAGACTTTCTCTGAGAAAAGCAAGACCAAAGAGGGTGATGGTGGTGGAGAGATGAGAGTACACAATTGTGAGCACTTGCTTCAAAATCCTGCAGAGCAGAATTTCAGTGTGAGCACAGAAGCAGCTGGGTGTGCCTGTAAGTGCCGGTGACCTCAGCTGCTGGCCGGGTAGAGAACGGAGCTTCACTGGGACTTCTTGACTTTCAGCCTAGCAGATGTTCCAGCCCCAAAGTCACAGAGAGACCCCCACCTCCAAAAGGAATGGGTGGGAGACCAGAGAGATGAGTCAGCAGGGAAGATACTGTTCTTACAGAGGACCCAAGTGCAGTTTTCAGCCCCCATACACATGCACACACACACTTAGTTTAAGATCTTAAATTTTAACAATGTATATTACTTTGTTTTAATAATGTATATAACATTTGTCCATCTGTGTGTGGGTCTATGCATAGAAGTGTATGTGTCCAAGGAACCCAGACGAGGAAGTCTGATCCCCTGGAAACGAGGTATAGGCAGCTGTAAGCCACTCAGTTGGATGCTAGGAACTGAAGTCGGATCCTCTGTAGGAAGAGCCCTGGATCTTAACTGCTGAGCCATGTCTCTCCAACCTCCGAAATAGAATCTGTAAAAAAGATAAAAGAATGGGCTAGAACACCAATGTCATTCTGGTCTCCAAGTGATGGGTGTATGCCCCACCCCCACCCCATACATGTGTGGATGCTCTCACACAAACACACTGCTCTTTTTCCACTCCTCATCCTCCTTCTCTTCCTCCCCCTCCTCCCGCTCCTCTTCTGTAAGAGTCTGGGTCTGTAGCTCAGCTAGCAGGGTGCTTGTCTGGCACACTCCAATCCCAGCTCTGCATGACTTGGATGTAATCTGACAGGTGCACAGCTGCAATCCCAGCTCTTGGGAGGCAGAGGGATGGGGAGCAATACCCAGCCTTGGCTATATGACAAGTGTGTGGCCAGCCCAGGCTACATGGAACCCTATCTCAAAACAAAACTAAAATATACAAACAAACAAACAAACAAACAAAAACACCACCACTACCAAGTAGATCTTCTCTCTGGGAAGTGCCACCCACCTACCTAGTGACAGTGACCTCTGTCTGCCGCAG
Seq C2 exon
AGGGTGACCGGAAGGCCTTTTATGAGAGCTCCCAATGGAACATGAAGAAGAACCAAGACACCATCAACCAGCTTCAGGAGGAGACCAAGGCTCTCCACGTGCAGCTCAAAGACCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632-Ccdc151:NM_029939:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=NA C2=0.293
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079166=TraG_N=PU(20.5=82.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: