BtaINT0034482 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038195 | CD302
Description
Bos taurus CD302 molecule (CD302), mRNA. [Source:RefSeq mRNA;Acc:NM_001110191]
Coordinates
chr2:36674766-36675947:+
Coord C1 exon
chr2:36674766-36674882
Coord A exon
chr2:36674883-36675773
Coord C2 exon
chr2:36675774-36675947
Length
891 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AAATATTCCTTAACTGACAGATG
3' ss Score
5.96
Exon sequences
Seq C1 exon
GAGCAGACATGATAAGCATACATAATGAAGAAGAAAATGCTTTTATACTGGATACTTTGAAAAAGCAATGGAAAGACCCAGCTGATATCTTATTAGGCATGTTTTTTGACACAGATG
Seq A exon
GTAAGTGGTATTTACAGTCATGTTCTTTCTTAATGTTAGTAGTAACTTTTAGATGCTTCATTTCTCTAGTTCAAGTTGGTATTTCCTGCAGCTTCCAGGTACCGTTTTTTCAGTATGCGCTCATGTACCACAGCTTTTCACTGAACAGCTCAATGCGTGTCCCATATGAGAGCTAAAGTTGATTCTTTCACCTGGATTAAAATATGATTCTAGACTCAATATTTCTGTAATATGGTAGAGTAATATTGGTAGTAGTATCAACAATGGGATAGAAAACTATCAAGGTAGTATTGTAGAAATGTACCTATTGTCACTATTGAAAATAAAAAGTACATCTATAACGTTTCAAAATCAAATGCAATTACTAAGGTTATGCAAATGAAAATCACATGAAGCATATACAGATTATACGTTACTATACTACATATACTTTTGTTATTGTCGTTTGGTCGCTAAGTCATGTCCAACCTTTTGCAACCCCATGGACTAGCCTACCAGACTTCTCTGTCCGTAGAATTTTTGAGGCAGTATTTTACCTATTGATTATTTCTCCATGAAAATTATATGTTTAATAAAAAATGGGATCTTCTTCCGAACCTTCTTGAACTAGTATCTCTTGCCTGTGTATAGGATATGTTCTTCCAGTTTAAGTCCTACAATCAGAAGTTTAGATCAAACATACCTTAGTAACTTCCCACCTTTAAATCTAGACCCAAGAAATCCCTGGTGGTCCAGTGGTTAGGACTCCACGCTTTCAATGCTGAGGGCCTGGGTTCAATCCCCTGGTCAGGGAATGGAGATCCCACAAGCCATAATCAAAAAATAAAAATAGATTTACTCTTTTAACACATTTTATACTGTCATAATGTTAAAATATTCCTTAACTGACAG
Seq C2 exon
ATGCCAGTTTCAAGTGGTTTGATAACTCAAATATGACATTTAATAAGTGGTCAGACCAAGAAGATGACGAGGAGCTAGTTGACACCTGTGCCTTTTTGCACACCAAGACAGGTGATTGGAAAAAAGGAAACTGTGAAGTTTCTTCTGTGGAAGGAACCCTTTGTAAAGCAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038195:ENSBTAT00000056635:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.1=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(50.5=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGACATGATAAGCATACATAA
R:
AGCTGCTTTACAAAGGGTTCCT
Band lengths:
290-1181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]