HsaINT0031044 @ hg19
Intron Retention
Gene
ENSG00000241399 | CD302
Description
CD302 molecule [Source:HGNC Symbol;Acc:30843]
Coordinates
chr2:160636516-160637509:-
Coord C1 exon
chr2:160637393-160637509
Coord A exon
chr2:160636690-160637392
Coord C2 exon
chr2:160636516-160636689
Length
703 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AAATATTCCTTAATTGACAGATG
3' ss Score
5.63
Exon sequences
Seq C1 exon
GAGCGGACATGATAAGCATACATAATGAAGAAGAAAATGCTTTTATACTGGATACTTTGAAAAAGCAATGGAAAGGCCCAGATGATATCCTACTAGGCATGTTTTATGACACAGATG
Seq A exon
GTAAGTGATATTTACCTCGTGGGACGTGACTTTGTTGTTCTTTTTTTAATGTAGCAAAACTGATGGCTTTTCAATTCTCTGGTTCAAGTTGATGATTCCTGTGGCCTCCAGGTGTTAAATTTTCAGTGTGCACCTATGATCATACCACAGCTTGTATCTGCATAGCTCAATGAGTTACACAGATGAAAGCCACAGTTGATTCTTGTCTGGATTAAAATGTGGCTCTAAGGCTCAGTATTTTTGTAATATAGCATGATCATAAAGGTAAGTATTAGTGTCTGCAACTAATAGGCTAAGGATAGACTAAATTATCACGGTTCTATTATATAAACATATTTATCATTACTGTAGACAAAGTACATATGTACAAATATAAAAGTACATATGTAAACATTTTCAAATGAAATGAAATTACTAAGGTTACTATTAATATTTAACTATTTTTCTTGACTTTTTTCCCATGAGAATATTATACATGTATATATTTTTGCGAAAATTGGATCATCTTCAGAAACCTCTTAAATCGATAGCTTTTGATGATTTGGCTGTACACAGGATATATTCCTCCTTCTAATTTTAATCCTACAATCAGAAGTTTAGACCAGACATACCTTAGTAACTTTCCACCTTTAATCCTACACCCTTTTTGGCTTGAACTCCTTTTAAAACTGTCATAATGTTGAAAATATTCCTTAATTGACAG
Seq C2 exon
ATGCGAGTTTCAAGTGGTTTGATAATTCAAATATGACATTTGATAAGTGGACAGACCAAGATGATGATGAGGATTTAGTTGACACCTGTGCTTTTCTGCACATCAAGACAGGTGAATGGAAAAAAGGAAATTGTGAAGTTTCTTCTGTGGAAGGAACACTATGCAAAACAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241399-CD302:NM_014880:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.1=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(50.5=94.9),PF113683=DUF3169=PU(46.5=89.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGACATGATAAGCATACA
R:
GCTGTTTTGCATAGTGTTCCTTCC
Band lengths:
289-992
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)