RnoINT0032132 @ rn6
Intron Retention
Gene
ENSRNOG00000006623 | Cd302
Description
CD302 molecule [Source:RGD Symbol;Acc:1307606]
Coordinates
chr3:46335092-46336080:-
Coord C1 exon
chr3:46335964-46336080
Coord A exon
chr3:46335263-46335963
Coord C2 exon
chr3:46335092-46335262
Length
701 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TCATGTTCCTTACTTGACAGATG
3' ss Score
8.53
Exon sequences
Seq C1 exon
GGGCAGACCTGGTAAGTATACACAATGAAGAAGAAAACGCATTTATACTGGACACTTTACAAAAGCGATGGAAAGGCCCGGATGATCTTCTGCTAGGCATGTTTTATGACACTGATG
Seq A exon
GTAAGTGGTGTTTGCCCTGTGAGGCATGGCTGTTTTTGTTTTTGTTTTTGTTTTTTAATGTTAGTAAGACATACGACGTTTGGTTCTTTAATTCCCTAGACCAGTGGTCCTCAACCTCCCTAATGCTGTGGCCTTTTAATATAGCTCCTCATGTTATGGTGACTCAGCCATAAAATTTTCCTTGTACAACTGTAATTTAGCTACTGCTAGGCTGACTTTGAACTCAGAGATCCACCTGCTTCTGCCTCCCAAGCTCTGAGATTAAGGAAGTGCACCACCACCACCTGGCTATAAATTGTGTTACTATACAAAACTACAAAGCATACGGTTCTTATAGTGTCTGTATAATTTATATATAGTAGTATAATATGTAATATACAAAGTATGTATGTGTACACAAACAGAGATAATAGTCACATTTTTAAATGTCATAAATAAGGTTATTAATATTTAACTATTTTAAGTTATTTCATCAAAATGCTTTTCTTCACAAAAAAAGGTACCTTTTCCAGAATCCTCTTAAAATCAATACCCTTTGATGATTATGTATAATACAATATAGTGTTCCTTCTACAACTTTTAATCCTACAACCAAAAATTAGACCATTAAATATGCTACTAAGTCCCTACATTTAATGAAAATATCTTCTTTTTGGTTCTTAACACCTTTGAAAACTGTCATCATGTTCCTTACTTGACAG
Seq C2 exon
ATGCAAGTTTCAAGTGGTTTGATCAGTCAAATATGACATTCGACAAGTGGGCAGATGAGGATGGTGAGGACCTAGTTGACACCTGTGGTTTTCTGTATGCCAAGACAGGTGAATGGAGAAAAGGAAATTGTGAAATGTCTTCTGTGACAGGAACACTTTGCAAAACAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006623:ENSRNOT00000008987:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(35.5=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(50.0=94.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGACCTGGTAAGTATACAC
R:
GCTGTTTTGCAAAGTGTTCCTGT
Band lengths:
286-987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]