BtaINT0034644 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002135 | CD69
Description
Bos taurus CD69 molecule (CD69), mRNA. [Source:RefSeq mRNA;Acc:NM_174014]
Coordinates
chr5:100740574-100743472:+
Coord C1 exon
chr5:100740574-100740718
Coord A exon
chr5:100740719-100743349
Coord C2 exon
chr5:100743350-100743472
Length
2631 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CATCCACTTTCTCTCTTCAGGTC
3' ss Score
13.26
Exon sequences
Seq C1 exon
GGAACAAGAGCTCCAGCAGAGACTTTCACTGTAGGTTGGCTCCACGTGGGATTAACCAGGGGGATTGTGACAAGGATGAAGATGAATTCTGAAGATTTTTCTGCAACAGAGACCAGCTCCTTGCACCTGAAAAGAGAACAACAAA
Seq A exon
GTAAGTCGATTCTTTTTCTCTAAATACTGGTAATATCTACATCTATGTTTATATCTATCTATGATATACACCAGTAGTTAGGGAGAAAATCAAGCTTGCCTTTTGTGGAAAAACTTGGCTATGTTCTATTTGATCAGGATACAAGAGAAAGTGGGAAGAAGTAAATATTTCTTTATCTATGTGAACACAGAATACCTGAGACACAAAATGAAATCACAAAGGTGAATTTTAGAAACTTCTTAAAAATCTACGTCTTTGTTTTATTTTATACCATCTCAGTTTTTCAGATTTAATTAGAAAATCCCCTCCCTAGCCCAGTGAAGTATCATTTTTTCATAGCCATCTGGACATCCCTTAGGAAGCACTGCCTCTCTTTATGAAAAATTCTATTTTTCATTCTTGACTGGCTGAACCTTGTACCATTGTGTGATTTTCATGGGCTTTATCTTGTGTTCTCAAGAAAACATCCTCCAGTTGCTAGGAACACAGGTTTCCAGACTTTGAGAGAATAGCCATATAAGCATCTGAATATTTATAGTGTCCAAAGGCAATTTATTGTGAGAACCTCATAAAGAATTCTTGAAAACACAGTCTTCTTCTCTAGTCCTATGGGTACTCTTTCCCTCCATTTCACTTTTCTATTTGTTGTTGTTGCTGTTCAGTCACTAAGTTGTGTCTAACTCTTTGTGAACCCAAGGACTGCAGCATGTCAGGCTCCCCTGTCCTCCACTGTTTCCCAGAATTTGTGCATATTCATGTCTCTTGAGTCAGTGATGCTATCTAACCATCTCATTCTTTGCTGCCCCCTTCTCTTCCTGCCTTCAATCTTTACCAGCATCACGGTCTTTTCCAATGAGTCGGCCCTTTGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCATCAGTCTTTCCAGTGAATATTCAGAGTTGATTTCCTTTAGGATTGACTGGTTTGATCTTGCCCTCCATGGGGCTCTCAAGAGTCCCCCAGCACCACAATTTGCAAGCATCACTTCTTTGGCACTCACTTTTCTATTTCACCTTTCTAATCGTGGACTTCAAATTCTATATGAATCAGACATTTTTCTTCCTTTCTTTTATTTTTCGTCAAAATCTACACTTTTGCTGTATCACTTTTCTCATTTTCTGTTTGTCTAATCTATCCACAGACCTTTTCATCTCTTGTCACCAGGATTTTCCCATTGTTTTCCAATAACTTTTTTGGTGAAACTTTCTTGACTTATTTCATTTCTCTCTCTCTTCCTCTCATGTTAATGAGGTGCCCCAAACACTAGAAGGTAGGAACTAGAGTTTACTTGTAAACACAACTATCCAGTAACAAAGAATGTGTTCAGAACAACAGAGGTGAAAATACCTAAAGGAGGGGGTTGTTTTCTGAATATGTGTCTACTAGCATGGTTTGCTTTAGAAAAGCATTCATTGCCTCTGATAAAACTATCTTTCACTTAGGAACACAAAATCAAGTGTGGATATTGCAAGCCACACAAATTTTTTGGTGACCAGATACCCATAACTTGATGACTCAGCTGAACTTCCTGAAAGAAAATGTATATTTAAGAATAAAACCATTCAATAATAGCATAGTTGAAATAAGAAGGAATTAATTGTAGGAATTGTGAACTTTTCCTGAAATCATCCCAATCTTCTATTGAATACTTGATTTATGAATATTAAGTCTATGCTGCTCTTGTAGCTTTATCAGTGTGAACAATCTTTGAGCACCACCCTTGAGGGATTCAATATGTACTAGAGGATTTGTTTTCAAATTTCTCCATTAATGGACAGGGCTTGTAACCAAAGCGGAAGTATACTCTTAGGGGAATGTTTTGTTGCCTAGGTGATAAAACAAACTGTGAATAACAATAGCCCTAACTAATGAACTAATGATATAACTTAAAATCAGAGAATCACCTCCTCAGCTTATCCACTGGATGTCCAAGCCAACAGTGTGAGTCCAGTGGATAAGCCAGTGGACTCTGGCATCCATGAGCTACTTGGATGTGTTGATACCTGCTGAGGAGCCAGAGATGTTCCTGCATTGAGTTTGAGCCCCTTCATTGAGTCTCACATGGTGAGAAGTGAAACTAGACAGAGAGCTCTGAACTTGCTACCCCAACTACCAAGCGCTGCTTCTGGTAATAGTTGTATGCTGATGAGAAAATAAAGATTTGCTTTAACAAGTTGAGAGAAATAGAACCAGATAGGAGTGAAGAAAAGTCTTCTCTTGGAAAATTTGAAAGCAGATCTATGCTGGGAAAAACAACCTTCAGAAGAGGCAAAAGTTGTCTTAACATCCATTGCATAGTAAATTGCTTTGAAGGAAAACAGCATCTCTTTGTCTAGTTAAACCTTAAAGAATACAATTATAATATATGTTGATTTTCATAGCTACTCAGTACATATTTGGGCAAATATTTTATAATCTCATTATTGTGACTGGATTGTTTCATTTCTAGCCAAAAATAACTTATTCAAAATTTGAGGAAACGTAACTTATAAATTTCACATAAGAAGGTAGGGAGACATATATTTTTTTAAATGCCTCAAGAGAAAATCAAATATCTCTTTCTTACTTCTATAGCCTGCCTCATCATCCACTTTCTCTCTTCAG
Seq C2 exon
GTCATGCCACTGGGACTTATTCTGCAACATATCATGAAGGGTCCATTCAAGTTCCTATCCCATGTGCTGTAGTAAACGTGGTCTTCATCACCACTCTCATTATAGCTCTCGTTGCTCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002135:ENSBTAT00000002767:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]