MmuINT0032466 @ mm9
Intron Retention
Gene
ENSMUSG00000030156 | Cd69
Description
CD69 antigen [Source:MGI Symbol;Acc:MGI:88343]
Coordinates
chr6:129221353-129225387:-
Coord C1 exon
chr6:129225240-129225387
Coord A exon
chr6:129221476-129225239
Coord C2 exon
chr6:129221353-129221475
Length
3764 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CCACTTCTCTCCCTTTTCAGACC
3' ss Score
12.36
Exon sequences
Seq C1 exon
ACTGAACAAGACAGCTCCAGCTACATCTCTCCGTGGACCACTTGAGAGTCGCCAGGGACCTTGAGGGGAAAAAAATTAAAAAGGATGGATTCTGAAAACTGTTCTATAACGGAAAATAGCTCTTCACATCTGGAGAGAGGGCAGAAGG
Seq A exon
GTAAGTCATGTGATTTCTTACATTCTGGAATGATCTCTACATTTGATGTGTGGAATAGAGCGGAGAATGGAGAGATTATCAGAGGACTTGGTTATGTTCTGTTTCAATCAGTAAAAGAGAAACTGGGCATAGGTAAATACCTCTCTAGCTATGAGAAGACAAGATACTTGTATGAGAGAGAGCTATATGACTTTCAGATGATCTTGAAAGGACTTTTCCTTTGAATAGATTTGTAACATCTCAACTCGTGGATTTAAATGATAAATGATAAATTGCCTGGCTTGACCTAGTTATTCTCTATAGTTTTCCCATAACCACCATCATCAGTAAGTTTTATCCTTTTCTTTATGAAGAACTCTGTTTTTCACACAAAGAGTTACGTTCTTGCTCTTTCCTTATCCATTTGCCTGCTTTCTGTGTGTATTCCCTCATTAGTGTTCTCCTCATGAATCCTCCAGTGGTTAGCAGCATTCGGGTCTCCAGGCTCAGAGAAAACAGCATTACACACACCTGAACATGTGCAGTGTCATATGGTGATGCATTAGAATGTAACCCTGTCATTAAAATGTCATCTTCTGCAGAGACCTATGGAATCTCCTCCTTACATTTTGTTCTGTCTCTCTCCTCCAATGAATCACTTCAAATTCTATGACTATATATTTTTCTTCCTTTTTACAAAAGCATGATCACCCTTCACATTTCTGTCTCTTCTGTCTGTTTCTATCTGAGTTGTAAGGAGCCCTCCAGCACTTAGCACTTGGGAATGAGAGTTATTTGAAAGCACGAGCGATCCAGTTAATAAAGGGATTTGCTATGACCAACACCGCCAAGATAGTTGGTGAGGAACGAATTATTTTCTGAGTTTCTCTGTCAAGTTGTCTTGTTGTGTAAAAAAATTAAAAATAAAAAATTTTTTAAAAGTCTCAGTTACCTTTAAAATCTCATCCCTTCTTTGAGAGCATGAAGTCAAAAACATAGATATAAAGTCTACAATATTCATTTTTAGATACCTAAGCAACCCATACCTATATGTCTCACTTAAATTTTTTTTAAAAAGCAGATAATAATGAAACTATAATAAATAGTGGAATGAAGGAAAGACCAAATGCAGAAATTCCTGACCTGGCCTGGGGTCAGCTCCATCTACCTTTGTATATTTAACTTATGTTCTCACGGCCATGACCTTAGCAACACAGCAGCAGTGGAATCAACAGGCTCCTCCTTGGGTGACTGAAAGTTGGTAAATAGGTGGATCTGTTTTCATGCTCTCCATTAATGCACAGGCCTCAGGAGTGTGCTGTTAGGGGGGGATGTTTTGTTGCCTAGGTGACAAGTTGAACTGTGGTTAGCCATGACCCTTGGAGATGGAAATAAACTGTCACGTGGGAGTTGGTCTACATAGTCTACCCACCAGGTGGGTCAATGGGCTGAATGAACTAGTTGAGGTCTAGGGTTGCTTTGGATGTGGGTATGTTTGCTGTGCAGTCAGAGATATTGATAAATTGAGTCCAAGCAATGTGACTATCATATGTTGAGAAACGAAACTAGACCAGTCTCTGAACCTATTACTCAAGCTACAAAGACTGCCTCTGAAGATAATTGTGTATGTGTGTGAAAAGGAAGGCAGGGGAAAACAGACCTAGGCAGGATTGATAAAGGCTTCTCTTAGAAAACTTGAAATCAGATTTTCACCAAGAAAAAGAAAATCCTACAAAATGTACAAGTTGGTGATACTAGCCATGTGATGTCTCCTCACCAAGCTTATCTGGAACAAAATGTTTTAAGAAAAAAAAATCCACAAATTCCAAGATAAAATCTACAGAAATAATCTTGTAACTATAAAAAGTCATCTACAATGGAAAGTTAAGTGTTTTTATAATGAGAAAAGATTTGACATAACTTTTCACCTTGTAGCCATAGGCTTCAAGCTCACACTCCTTTGACACTAGACTCCTAAGTGTTGGGATTACAACTGTGGAGAGTGATTTTCACTGTTAATTATAATCTTATTCAAGGAGCCATTTTGTATTAAAGCTTCCATGAGCATTAAAAAATTCACACTGAAGAATTTGGGAACATACAAGGGCATTCTAGTGGGGGCATACTGTTTTGAATCATGAGGGTTCACCCTGTAAAAAACAAAATCCAAAATCTAAAGCCAAAAATTGACTTTCCCTCTGCAGTCACCTATTTACATGCTAGTACAGGCATATTTCTATCTATCCAAATCCTGATACAGAAACATTTATTAGTTAAAGGTAACTGTGACTTTGTTCAACCTTTATACAGTAAGTTAAATTGGGGGGGGGTCTGTTCAATATGTTTTATAGCATTGTTACTTTTCACTTATTATTTTAATCCATCTTAGAAAATGTAATGTTTCACTGTTCATTCTTACATTATCACTTTAACTGTGCTATAATTTATATGCAATTAATGAACACACCATAGGAGTGCGGTGTAAGGACTCAACAAATGTATAGCCACAATTCCCATCAATATTTGAATATTCCCGTGACTCTAGGGCACTCTGTAGGTGCCATTGTCACAAGCATAAATGCAAACACTTTTCTTACATTTGACACCACACCTTATTTTTGTCTAAAGTGCCAGTTACATAGAAATACATAATATGTAATCTTTAATGAATATACTGTTTTCATTTAACATTATTTTTTAAGATTTATCATATGGTATGCATCAGGGCTTTATTTTAATTGCTAGAATCATTTTTTTGTGTGGAAATACTAAAAAGTGTTTATTCATTCTCATGCTGACAGGTATTTGGATTATTTTCAGGACTTGGTCTTAGTGATGATAATTCTATGAATATTGTTGTGCAAGGCATTTTAAAAACATGGGGTTTTTTTAGAGGTGGTGGTGGTGGTGGTATGTGTGTGTAGGACTGTCTGGATCTTACAGTAGTATATGTATAACAATGTTTTTTATTTATGTCTGTGGAAGTGTAGGTCATGTGTGTACAGGTGTCTTCAAAAGCCAGAAGAGGGTACTGGAACCTTCAGAGCTATAGTGACAGATGGTTGTGAGCCACCTGATGTGGGTTCTGGGAACCAAACACTGGTCCTCTACAAAAACAGTACATGCTCTCTAACACTGAGGCATCTCTTCAGCCCCTGTGTGTTCATAACAATGTAAAAAAGCGTATTTTTCCAGGTTAGCCTCTTAGCATTAATATATGAAAGTTTGCTGCACTGGTATTACCAAGAAACAAAATCAAGTTTGCAATTTTTTAAATTTTATCCTACTTTTGGATATTTATGCATAAATTCTCATTGAAAACATTTATTCTGAGCATTCCATCTCCCATAAACAGTAGCTAACTCCAAGGAGACTAGGGAACTACAGCCAGGATACTCTTTTTATATGTCTCCTATAGCAAGTGGGTGCTTAGAAGTCTTAAATAATGATATGCTTGAATTTTTCATAACTATGAAATATACCCATTATGCCTACTAAATACATATATAAATTATATATTTATGCATATATACATACATACATACATACATACATACATACATACATACATAGTGAAGATACCTATTAAGTCAGCATTTTATTTGCTTTGCCTTATCTCTAGCCAACAAGACGTTTTCCAAATGCACTCAGAATTTGGTAAAATTGACCATTAATATTTTTTATTAGTGGAACAACACATTACTATGCTTAATTTTATATTCCTCAGGGAATATCAACTGCTCCATCTTACAGCCTGAATTCACCCCACTTCTCTCCCTTTTCAG
Seq C2 exon
ACCATGGCACCAGTATACATTTTGAGAAGCATCATGAAGGATCCATTCAAGTTTCTATCCCTTGGGCTGTGTTAATAGTGGTCCTCATCACGTCCTTAATAATAGCTCTCATTGCCTTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030156-Cd69:NM_001033122:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF151761=LRR19-TM=PU(36.5=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: