HsaINT0031249 @ hg19
Intron Retention
Gene
ENSG00000110848 | CD69
Description
CD69 molecule [Source:HGNC Symbol;Acc:1694]
Coordinates
chr12:9908893-9913497:-
Coord C1 exon
chr12:9913353-9913497
Coord A exon
chr12:9909016-9913352
Coord C2 exon
chr12:9908893-9909015
Length
4337 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATCAACTTTCTCCCTTCCAGATG
3' ss Score
11.51
Exon sequences
Seq C1 exon
AGACTCAACAAGAGCTCCAGCAAAGACTTTCACTGTAGCTTGACTTGACCTGAGATTAACTAGGGAATCTTGAGAATAAAGATGAGCTCTGAAAATTGTTTCGTAGCAGAGAACAGCTCTTTGCATCCGGAGAGTGGACAAGAAA
Seq A exon
GTAAGTCAGATCTGATTGCCTATTTACTCTCTGGTATCTCTATATATGACATTAATAGTAGTTATACAAGATATACTGGTAATCTCTCTATATATGATATATAATCTTAGAGAAATATACTGCTAATCTCTATGTATGTGATATCTAATGGTTGTTAGGGAAGGAAGTGAGGCTTTGTCTTTTAGAGAAGACAGGTTCTTCTTCAGGGAAGAGGTAAACCCCTTTTTATCTATAAGAAGATAGAATACCTGAGATGAGAGAAAGCCGCAAAAATGAATTTCAGAAGATCTTTAAAGATCTTTCTCTTTGCTTTAGTTTATATCATCTCAGTGTTTAGATTTAATTAGAAAACTTTCTGCTCTAGCCCAGTTATTCTCCATCATTTTTTTCATATCCATCTGTACATTCTCCAGGAAGTGTTGTCTCTCTTTATGAAAAATTCTGTTTTCCACATAAGCAATTACATTGTTTGCCTTCCTTTGCATTCAGTGTCTGCTTTCAGTGTACCTTATCCTGTGTTCTCATGACAGCATCCTCTAGTTGCTGGAAATGGGCAAGTTTGCCATCTTTGAGAGAATAGCTATATCAGCAGATGAAAATTTACAGTGTCCATTTGTAATTTGCTAAAAAAAAAAGTCACAAAAGAATTCCCGAAAATGCAATCTCCTGCTTTGGTATTCTTTATAGGACTCTTTTCCTCTATTTCATCCTTCTATTTAACCTTTCCAATCTCTGGCTTCAAAGACTATGTAACTTAGAATTTGTTCTTCCTTTCCTTTGTCTCTCAGCAAAATATAATCATCTTAGAAATTTTCCTCTCTTCTATTTGTCTATTCTATCCACATATCTAGCTTATTTCCTGTTACTGGGATTTTGCCTATTGTTTTTCTATACCTTACTTCTGTAAAATTTGTTGAGTTTTTCTATTTATCCCTCTTTCTCCTTAGTTAATGAGGTACCCTAAAGCACTAGCACTTAGGAATTAGTCTACTTGTCAGCAAGAGCGATCTATTAACAAAGGGATATGTAAGAAACAGGAGAACTAAAACAATCTTGTGGAAAGGGATTATTTTCTAAGCGTGTGTCTACTATATTAGTTTACTTCCGAAAAACATCAGTTACTTCTCATAAATCCATCCTGTGTTTAAGAACATAAAATATAGTGTGGATTACAAATGCAAAGCATGCAAATTTTCAGGTAATCAGGCGAGCCATTACTTACGGCACAGGTGTGCCGCCAAAAAGAAATAATAATAATAATAATAATAATAACTACTCAATAAATAGAGAGCATAGGTGAAAGAAGGACCTAATACAGAAATTTTTAACTTTTCCTGATACTGTTTCAACTTTCTTTTGAATGTCTGATTTAGGCTGCCCTAGTCATCCTTGGACGTTATCCTTGGGTGATTCAATTAGTAGCAAATTGAGTTGATTTTCAACTTCTCCATTAATGTGCAGGACCTGAAATCAAAGCAAAAGTGTGCTGTTGAGGGAAATGTTTTGTCACCTAGGAGATAAGTCAAGCTGTGGGTAACAATAGCCCTCAATTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACACGATGAAACCCCGTCTGTACTAAAAATACAAAAAGTTAGCCGGGCGTGGGGGCGGGCGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCACGCAACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAATAAATAAATAAAACAGTAGCCCTCATTAATGGGAATAAAGTATCATCTGAGAGTCATCCCAAAGCTTACTCCCTCGTTGAGCCGATGGGCTGACTGAGACTCTGGAACCCACGGGTCACTGGGGTGTGTTAGTGCTCACTGAGGAGACAGAGCTGTTGCAATACTGAGTTCAAGCAGCACGACTGACTCACATAATGTGAAGTGAAACCAGACAGAGCTCCGAACTTGGTACCTTGGGTAGCAAAGGCGGCTTCCAATGATGATTCTATACCGGTGAACAAAGAAAAATTTGCTTTGAGAAGCTGAGAAAATCGAGCTAGACGGCAGTGAAGTAAAGGCTTCTCTTGCAAAATCTGAGTGCCGATCTGTGATGGGAAAAATAACTTCCAGATAAAGCAAAAGTTGATGTGGACACCAGTACCCAGTAAATTACTGTGAAAAAAAGGCAACTTCTCTTGGTCCAGTTTACCTTTAGATAAATGTTTTAAGGGTAAAAATATGTGTATTTCAAGATATGTCTTATGTAAACTTTTTTAAGTTATGAAAATCATCCATATTGAAAAATAGAATGTTTTCTATTTTGAAACTGTTTTGCATTGTCAGTTACTTAAGCAGCCATTTTACATTTTGGTTTTTGAGAACATAATAGGGACCTGTATACTCCTTGTGGGGCCGCATTTTAAGACTCCTGACAGCTCATCCTGCAAAATTAAAATCCAAAATCTAAGTCGCAAAATTCTCTTTTCTCCTTCCTCAGTTATTTACTTAGAGTGTAGAACAGACATCCTCTTAGAGTTTTTTGTAACTATCAGTTATCGTTAACATCATATTTTTATTCTAAATCCTTCCATAGAAACACTGCTTGTTGGGAAAAAAAAAGGCTTTTACTTTGTTTCACCATTGTACAGAGGGTAAATGAAATAACTTTCGCTGAATATTTGGTCTATAATACTGTTACATTTCCTCTATTATTTTAACATCTTTTGAAAAATTCAAATTTTTACTGTTCATTCACATATCATTTTAAATTGAGGTTTAGTTCACATACGATGAATGCACAGCTCGTAGGTATACAGTTTAACGACTTATGACAGTGGTATAACCACAAGACCAGCAACATTTGAATCTTTCCATCACCCTAGACAGTTTGCCCTGTGTCCCATTCCAGTTAAATTACCTTTCCTACACACACAAAGGCAACTACTGTTCTGATTTTTGACACCAGAGCTTAGACCAACTATTATTTAAAGTCATGTAAATGCAAATATGTAGTATACAATCTTCTGTGGCTGGATTTTTTTTCACTCAACATTTTTTTTGGAGATTCCTTCATTTTGTTGCATGTATCAGTTGTCTTATTTTGAATTGCTGAGCGGAATTCCCTTGTATGGATATACCATAATTTGTTCACTTATTTTCCTGTTGGTGGATATTTGGATTATTTCTGGAATTTGGCTCTTAAGAATAAAGCTGCTAGGAGCATTCTTGCACAAGGCATTTTGAGAACATATTTTCATTTTTCTTGAGGATATACATAGGAGTAGGTTTGTTGGGCCATAGAAAAGGCATATATTTAATTTTATAAGAAACAGTTTCCAAAGTGTTTTTCCAATTTACTCTCCCACCAATAATATCTGAAAATTCCAGTTGCTCCACATCTGCAGCAACTTCACCAAAAAATACTGTCACGTTTAAAATTTTGTTCAGTCATTTTAATGTCAGATATTTATATAGCAATTCAATATTTTACTTTATGATATTATCCATATTTATCCCATTCACATCATTTCTCTCAAACAGTAACTACAAGGAGATTAAGGAATTATGCTAGAATTTTTTATTTATTTATTTATTTATTTTTTTAGACAAGGTCTCACTCTGTCACTCAGGTTAGAGTGCAGTGGTGCAATCTCCGCTCACAGCAACCTCTGCCTCCCAGGCTAAAGCGATCCTCCCACTTCAGACTCCCAAGTAGCTGGGAACACAAGTGCGTGCCACCATGACCAGCTAATTTTTTGTATTTTTGGTGGAGACAGGGTTTCACCATGTTGCTCATGATGGTCTTGAACTCCTGAGCTCAGGTGATCAATCCACTCACCTCGGCCTCCCAAAATGCTGAGATTACAGGTGTGAGCCACCATGCCCTAGAATTTTTTTATGTGTCTTCTGGGGCATGTGCATATTTAATAAACGTTCTTATCATCATTAAAACAAACTGATTATATACTTAGAATTTTCATAGTTACTAAGTGTATAAATCATATGTGTCAGGTAAATATTTTGGGGAGACACTTTATAATCTCATCATTATGCTTGAATTGTTTCATTTCAAGCCAACAATAAACTATTCAAATTCACTCAAAATTGGGGGTAAATTAACTTAGAAATTTCTATAAAGAGACGGGGAAATTTCATATAATGAGATAGGAAATATTAAGTTTAAATGCCTCAAAAGAATGTTGCATATTCCTATAGTACTTCTATAGTCTGCCTGAACTCATCATCAACTTTCTCCCTTCCAG
Seq C2 exon
ATGATGCCACCAGTCCCCATTTCTCAACACGTCATGAAGGGTCCTTCCAAGTTCCTGTCCTGTGTGCTGTAATGAATGTGGTCTTCATCACCATTTTAATCATAGCTCTCATTGCCTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110848-CD69:NR_026672:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)