BtaINT0034929 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005293 | CDC25C
Description
Bos taurus cell division cycle 25 homolog C (S. pombe) (CDC25C), mRNA. [Source:RefSeq mRNA;Acc:NM_001097996]
Coordinates
chr7:51315797-51317245:-
Coord C1 exon
chr7:51317183-51317245
Coord A exon
chr7:51315896-51317182
Coord C2 exon
chr7:51315797-51315895
Length
1287 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
3' ss Seq
CAGTCATAGTTTCTGTACAGGTG
3' ss Score
2.5
Exon sequences
Seq C1 exon
GTATGTGCACTGCCAACCGTGTCAGGGAAACACCAAGATCTGAAGTACGTCAACCCAGAAACA
Seq A exon
GTAAGCAGATTTCTGGAGATGGTAACTGGTTACATAAGCTGCCATCTGGTCTATTCTGTCCCTAAAATCCCCACTTCCATTTGTATTTCTTTCACTTTGTTCACTCATGTGGACTCTGTACTCAGCTGAAGCTATGTTAAAAGTCTCTCTTATATGTCACCTTTGTTTGTAATTAAGCAAATGATATATAATTGTTACGTAAGAAAGGAAGGAGGAAGGGGAAGGGAGAAAAGTAAAAATCACCCAATTAGGCTGGCCTTACATCCTGGTTTACATGTTGCAATTCCATTTATGCCTATTACTGCATATTATTAATAGTGCTCTCTGTTACTCTCAAAAGTATTCTGGTTTGTGCAGTAATTATTTTGTCACTTTACCCATAGGTTTCACCATCAGAGATAAGCACTAGTAAGACTTTCCTTATGGCCTTACAGATTTTATTCTGGTATAATAAGTTTTATAAAAATAGTATCATAATCATGTAATTTTGTAGTTAGCTTAGTAAGTCATTGTAAACATCTTTCTATATCATTTTAAAAAAATCTATATTATCCCTTTGATGGCTATGTAATATTCTGTTATACTGATAATATATAACTTTTTAAACTAAACCTCTTTTATTGAGTATTTAAGTTATTTATAATATTTTGATAATCTAAAGCAATGGTGAGATCAACATTATTGTGCCCTATCTTTATGTACTTCTGTTTACTTAAGATGCTAGAAAAGAACTTGCTGAAAATGTAATTACATTTATTTTTTTATAAGTATTTACAAAGTTTCCTCTGGAAAGTTTGAACCAATTTATATAACCACACGTAGCTTAAGTTTCCTCCTCTGGATATCAACCCTTTCCTTCATATCCCTTTTGAGAAACTCGCTTCCTAATCTTACGGTGGAGGGTGGGGAATCATTTCTCATTTCTTCTTGTAAAATTGAGACCTCTAGCTGCTACCTGTGCCCTTACAGAAATCCTTGGGTGTCTTCTCAGAGATTGATTGCATCCGTGTCTTCCTCCAAATAAGTAGCTTGAATCTTCTCCCTTGTGTCTTGGCAATACTGACTATTTTGGTTCTCCAAAAGGCCATTGCCTGTTTTATTCTCTTACTTGAGGAGGGTTGGTGGGGGGCGGTTGCACCATTGCCATGTTTCAAATATAGGGGGACTTTGGAGGCTGGGCATACAGTGGGATCCTGAGTGACTAAAAGGAGTACACATTAGGAACTGGGTAACTGGCTCTTCTCTCCCTACACAGAGGCAGGGTATTCAGTCATAGTTTCTGTACAG
Seq C2 exon
GTGGCTGCCTTACTATCAGGGGAGTTCCAGGGTCTGATTGAGAAGTTTTATATCATCGATTGCCGCTATCCATATGAGTACCTGGGAGGACACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005293:ENSBTAT00000006968:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0058115=Rhodanese=PU(25.7=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]