RnoINT0032532 @ rn6
Intron Retention
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27531935-27534739:-
Coord C1 exon
chr18:27534677-27534739
Coord A exon
chr18:27532034-27534676
Coord C2 exon
chr18:27531935-27532033
Length
2643 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
3' ss Seq
TAATCATTCTTTGTGTGCAGGTG
3' ss Score
9.22
Exon sequences
Seq C1 exon
GCGTGTGTACTGCCAACGGTGCCAGGGAAACACCAGGATCTGAAGTATATCAGCCCAGATACA
Seq A exon
GTAAGCATACTTCTGAAGATGGTACCTGGTTAGATCATGTCATCAGCACTGGCCTGTGTCCCAACACCCACGTCAGTCTTTCACTCCGCCCACTCCGATGGGCTCTTACTCAACTGGAGCTGTATTGAAGGCTCCTTTCTATTCTTTCTTTTGTAGACAGGGTTTCTCGGTGTAGCCCTGACTGTCCTGGAACTCATTCTGTAGACCAAGCTGGCCTTGAACTCAGAGATCAGCCTGCCTTTGCCTCCCAAGTATTGGGGTTAAAGGTATGCACCACCACTGCCCAGTTCCAATTTCTATCTTTTTAAAGTTTTTAGTTAAGGGGATGGAGAGATGGCTCAGCAGTTAAAAGCACCAGATGCTTGTCTAGAGGTCCTTTAGTTCGGTTCCTAGCAACCACGTGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCCTCTGACATGCAGGTGTGCAGATAGAGCACTCATATATATAAAATAAGGCTTAAATTTTTCTTTCGTTAAACAGATAATGTATTATTGTAGATAAAGGAGAGAAGGGAAGGAAAATATAAAAAGAAAAAAATCACTCAGTTGGGTTCTCAGCAGTTACGAATCCTGATTTATATGTTAATTCTCTCCCTCCTTCTCTCTCTCTCTCCTTCTCTCTCTCTCCTTTCCTCCTTCCCTCCCCTCTGTCTCTCTCTCCCTCTGCTTCTGTCTTTTTTTCTCTCTCTCTCTAACACACACACACACACACACACACACACACACACACACGATGACTCTCCTCTTGAGACAGAGTGTCTGATTCTCCTTCATCCTGACTGACTGTAAATCACAGTGTATTTGAGATGACTAATGATCTCAGAGTGTGTGCCTTCTGCCTCGACTTCCTGAGTGCTGGGGTTATGAGCAGGTGGCACCGCACCTGATATAAGGAGTGCTGGGATTATGAGCAGGTGGCACCGCACCTGATATAAGGAGTGCTGGGATTATGAGCAGGTGGCATTGCACCTGATATAAGGAGGGCTGGGATTATGAGCAGGTGGCACTGCACCTGATATAAGGAGTGCTGGGATTATGAGCAGGTGGCACCTCACCTGATATAAGGAGGGCTGGGGTTATGAGCAGGTGGCACCTCACCTGATAAAAGGAGGGCTGGGGTTATGAGCAGGTGGCACCTCACCTGATATAAGGAGGGCTGGGATTATGAGCAGGTGGCATCGCACCTGATATAAGGAGGGCTAGAATTATGAGCAGGTGGCACCGCACCTGATATAAGGGCTGGCAGTGTTGCAGGGTAGGGGAATAGGCTTGGTGTGTGTACTGTACCACCTGAGGTACTCCAGCCTCCTACTCTCCTCCTTCAGACAGAATCTGGCCTGGAACTTACAGTGTAGACCAGACTGGTTGTGATTATTGAGATCCGCCCACCCAGCTTATAAAAAATGAAGTAACAATGAACTTGTAGTGTTCCGGTTAATTTGGTGAGATAATCAAAAGCACCCGAGATGAGGCCAGCCAGGGCTACATAGTGAGGTCTAGTGTCAAGGAAAAAGGTCAGGTGGTGGTGGCCCCACATACTTTTAATCCTAGCTCTTGGGAGTCAGAGGATGTCACATTCTGTGAGTTTGAGGCCAGCCTAGTCTACAGAACAGATCCAGGACAGCCAGGGCTACACGAAGAAGTCCTATCTCAAAAACAAAAATCTATGTTGTCTTAATAGCTATGAAATCTGTTATACCAGAATATGTTTAACTAAACCCTCTGAATGAATGCTTGAGTGGTTTGTAACATTTCAGTATCCTGAGACATTGCTAAGATGAGAATCAGTTTGTGTACTTTTACTTAAGGGGTTAGAAACTGGGCACGGTGGTACGTGCTCATAATCCCAGCAGTTAGGAGTTGGGGCCAGGAGGATCAAGAATGCAGAGCCATCCTCTGGTACATAGTGAGTTTGAGGACAGTCAGGCTACTTAAGACTTTATCTCACAAAACAAAGATTTTAAAATAGGAAGTATAATTCCATGTATTTTGTATGTCCTTACAAAGTTCTTTCTTTTTTTTTTTTTTTTTTTTGATTTATTTTATTATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCGGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAACAGTCGGGTGTTCTTAACCACTGAGCCATCTCTCCAGCCCACAAAGTTCTTTCTTGAAAGGCTGGACAAGTTTATTCTTCAGGACTTGGTGACTGGGGAACTGTCCCTCACGTCCTCTTACATTGGGTTGTCTAACCACTACTACCTCTGCTACTGCTCTACTCCTTAGCTGTCACCTGAGAGGCTGGTCTTAGTCATGCTTTCTTCTAATAGACACCCTCAGTATCGGCCATTTGGGTCGTCTACACAGGCCATTTCCATGTCATACTCATGTGGGGTTAGGCTTACTCCACTTGCCCTGTTACAGCAAATACAGGCTAAGTTTGGAGGTTGTACATATAGTGCGATTCTGGGTGACTAATGGAAATATTGCTAGAAGGAGCTGTGTGGCTCCTCTCTCGGAGCAAAGGTGAACAGGATATTTAATCATTCTTTGTGTGCAG
Seq C2 exon
GTGGCTGCATTGCTGTCTGGGAAGTTCCAGAGTGTGATCGAGAGGTTTTATATCATTGATTGCCGTTATCCGTATGAGTACCTGGGAGGACACATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008:ENSRNOT00000037368:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0058115=Rhodanese=PU(25.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]