BtaINT0035041 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69327598-69333371:-
Coord C1 exon
chr21:69333279-69333371
Coord A exon
chr21:69327682-69333278
Coord C2 exon
chr21:69327598-69327681
Length
5597 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
AACTCTCATTTGTATGACAGGTT
3' ss Score
7.29
Exon sequences
Seq C1 exon
GCAAAACCGTTTACACAACTGGTGAAGGAAATGCAGCTTCATCGAGAAGACTTTGAGATCATTAAAGTGATTGGAAGAGGTGCTTTTGGTGAG
Seq A exon
GTAAGGTAGACTTCTTCCCTCCCTCTTCCCTTCCCTCCCATCCTTCAGTTTTGCCTATCAACTGTTATCTAGCGTTTCTAGGGTCCTGTACGTTGATTTTTGAGATGAGGTAATTTATTGGTATCATTTGGAGAGTTCTTGGTGGATAAAATCTGAAAGATAGAATTAAGGAGAAAAAAAAAAACAAAAAGGAGAAAAAAAAACAAAAGGTGGTGACTGGTGAATTACCCTAAATATTGTCTGGACCAGAATAGTTCTTTCTGACAGAGTAAGTTTTTAAAATTATCCATTTGTCAGCTGAAAAAAGTCTTGGCAGCCATTTTAGAAAAAAGGAACGATCGTCTCGGCGGTGCTCACTGTTGGTAGCCTGCCCGCCGCCCGTCTGTCCTTGTGGGGTTGAGTCCAGGCCTGTGTGTGTGTGTGGGGGTACAGATGGGAGCAGCCTGTGCACCCGGGCCAGAGCCGCTGACCTCCTGTCTCAGAGCCCAGCAGCGGGCCGGGATCCGGTGCGTTCGCAGGGGCCCTTCACTGAACGGCAGTAATGCCGCTCCTTCAGATTTGCTTCAGTGCGCCTGGGCCGGGAGCTGTGTGTGTTGGTGAGCCAAGCGCCCTGTCACGTCCCAGCTACGCGTGTGCTCTGCTCGCCAGTGACTGCGTGCACGGCGTACACTTCACACTACACGCGGAAGGAAGCAGAGCAGGGTTTAATGAGATGGCTTCTTTGCCCTGGAGCTTCTCATGACTGCTGCGGACTGGCATCTGTTTTAGAAAACATCTCAGCATTTTTGACGATTCTTGCGCTGCCAGCACCTGAGGACAGCCCTGCTGTATCTGCAGGGCTTGAGTAGAATACACAGAAGGAGACAGCTGCGATGAAAACGCCTTCAGAGTACCTGCGTGAGAAAGCCTGGCCTGCTGGCATACACGTGGGTAGCTGTGTGTCACGCTCTTTTTCTTCCGTGGAAACCCCCGGCCTCGCGTCAGGCCCCGGCCCACGCTCTGTGGGGGACCTGTCGTCCTCATACCTTCCTCTCCCCCCCGAAGACCTGAGAGCAGATCTCTCCAGGCTGCAGAGGGAGGGGGAGGCCTGCCACTGGGGACAGCTCTGACCCGGGGCGACCCCAGACCGGCTATAGGCTGGGGCGGGACGGGGACGTTGGCTGTTGCTTTCAGATACTGAGGTGTACCTCCCCATGAGATGCATAGATCTGGGTGAACGGTTCTAGTTACGACAGTCATCTGCTCCTCTGCAATCAGCTCCCCAGTCAGTATGGAGCATCCTGTTCCCGGAGAAGTCCTTCCCCTTTCTCCCCGGAGCCCCCGCATCCTGGGAGCCCTGCCCTCCCCCAGCAGGGAAAAAGAGAGCTACACGGAGAAACAGCAGATCTCTCTTCAAACTGAAACCCAGCTCAGTTCAGTACACCCTTCCACCGCCTGTCTCCCCTGTGCCAGGAGCGGGGTGGTCTGCTGGGCCCAGCGCTGGCCACGCAGAGCTCCACACTGACAGCAAGCCCTGTAGGGTGTCAGGGTGGGGGCAGGGGGGACCCCAGGGCAGGACGGACGGCCTTCGGGAGGAGAAAACAAAAGCACCAGGGGCGTTGTTGCGCCAGAAGACTTGACAGTTATCTTCAGTGCTCTTTTTTGCCAAAGAACGTAATGCAAAGTCAGTTTCCGGTTTTCATAGAAGATGACGTGGATCGCTTTTCAGTTCCTCCCGGATCAAGAGAGATGCATCCTTGGAGTCCAGCCTTGGCTCCCTCTCCAGGTTTAGCAGCTTCTCTGTGAGAGGTACATCGTCAGCCCTCCTGGGCTCTGTGGCCTGGGCCCCCACACCAGCCCTCCTCACCCAGCTCCCCCGGCCAGGCGTCCTGTGTCCGTCGGCCCGCCTGCACACGGGCGCCGCCCTCAGCAGCGCAGCTGGAGTTCTGGGCTCTGCGGCTCCCCTTCCCATCACCGACGTTCCTCCCAGGAGTGGTCTTGTCATCACGTGCCTGAAATGTGGCCCTGTTTCAGCTCCTCTGTCTCCAGAGCACCCAGCGGATAGTGGGAATGGGAATACCCTAATCATTGTTGTGTCCTGAGTGTTCTTCACACGTGGTTCTAATTGAATGATTGCTTCCTCGTGACAAGCCAGGGATGGGGGAGAGTCTGTGTGCAGATCCGCCTTGTGTGTGCAGCTGTACACAGATAGATGTGTGTACCGTGCGTAGACAGGTGTGTGCACCTGTGCCTCTGACACTATGGCGGCACTGTTCAAGAGCCCTGCCTGTAGAAAGAACTTGCAGAGTCTGCTTGGAGTGGAGTATGTCCCTCTTATCTCAAAATTGTAGCAGAGCTCAGTGAAATTTCTAGGTTATTATTCAGCCAGGGCTTGGAGTCTCAGGGTGTTGGCTTGTTGCTGAGCTTTGAACACGTCTCTGTCCTCCCCTCAGTGTGGAGAAGTGGCCCGGGAGGTTCTTCCGACCCTGTACTGCAGTGGGGGCTTACTCCCCGGCTTCCGTGGTGCGGTGCCCAGGGCCGTGGCTTTGGACGTGACGGCAGGTCCCTGAGGGTGACCGTGTGCTGGGCACCACAGGCCTCACATGCTTTCATGGACATGGAGAAGGTGCGAGGCTGAGTCGCAGAGTGGGGGCCTGGCCGCAGGTGGGCGGTGGGGGGCAGCGCTGACCCCTGTGCCTGACGCAAAGCCCGCGTGTCCAGCCACCCTGCGCTGCTGCCCCTTGTTCCTAGGATGATTGAAAGAAGCAGAGCTGTGAAAGCTTTGTTTAGAAACAGGTTCAAATTAAGAGAACAGCTGTGTGCATAGAGCGGTTCAGAGACCGGTCCAGCCCTTTACTCAGATACCGTTTTGTTGGCGTTTCATCTCATTTTCTTGATCGTGGCGTAGCTGTGCTGCTCTCGCCTGCGCTCCCTCCCCCTCCTCCCCTGCCTCTGTGCGCGTGTACTTTATCAGAACCGTCCTGGGTGCTCTCTGAAAGCTTTCTGTGCCCCGGCAGGGCTCCTCTCGAGAGCCGCGCTCTCTTGTGGTCTGCGTGTCGTTCCCGGTAAGGTCTGGGTCATCACTGATGCTTGTCGTTTTCAGAATCGCGTTCTTTTTCTCAAAGGTCAGCAGCTCTGCCTTGCTTACCAGGTTAGACCGTTTCTGTACTAAGTACTAGCAGGTTTTTTTCCTCCACTTAATATCTTACCCACCCAGATTATAGCTGATTCCCAGGAAGAAATAGACCCTCCTCAGATGATGACAGCGTGTGCTCAGAGTCCCTGTCCTTAGACGTGTTGGAGAGCCCACTAATGTTCATTTGTTGTTGTTCTTAATTTATTCAGAATTGTAGTGAGTTTGGTCAGTGATTTCTGAATCGGCAGCGGACAGACAGCCGCTTAGGTGTGGTGTGCGGGGAGCGGCCCTTGGAGTGGCGGTGACGAGGTGAAGGGGGTGAGGGCCAGAGGGTGGTCGTGGGCACTCATGTGGAGGGGACCCTGGCTGGGAGCCCAGCCGTGCAGGGCACGTACCTCCGACCCTCTGCAGGCTCTGGGAGGATTATATCTAATTGTGACCATTGTGCTAAGACAGTCCTTCCCAGCACTCACCTGTGGGAATGAGGCTCTGCACCTCAGATGGCACACCTGTGACGGTATTAGAAGGAGCCACCATCTAGGACTGGAGAGGGCGAGCTGAGGGAGAGGGTCTGCTGCTCCGCACAGCCCGGGCACAGGCGGTGTTCTGTGCATGTCACCCCTGTGGCCGCTGCGATGATGTTGCTGTGTGGTGGTGATTAGAAAGCAGGGGAATAAGTGGTTCGCTTTTGTAACTCTCTGTCCTATCCCTGTGTGTGGCAGTCCTTGGCAGCAGAGCCCAGGTGCAGGGGTCAGTATCACTGCTTATGGTTTTGTGATGGGGACTTAGGGCAACGAGTGAGTGATTTATTTATATAGGGTAGGAGGCGCCATACGATGGTGCAGACATCACATCTCATGTGCAGCAATGGAAGAATTCATTTTAGATTTGATGGGGACCAGGAGAAGGCACTGGCACCCCACTCCAGTACTCTCACCTGGAAAATCCCATGGACGGAGGAGCATGGTGGACTGCGGTCCATGGGGTCGCTAGGAGTCGGACATGACTTCGCGACTTCCCTTTCACTTTTCACTTTCATGTGTTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTCTGGGGTCGCACAGAGTCGGACATGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGCAGTCCAAGAGGACTTCCTGGACGAGGTGGCATTTGAGTTGTACCTTGACGAATATGGCTGACAGCCAGCATGTTGAGGGCTAATACCTATGTTCCTAAACCACCCTGAGCCGTGTTGAGCGTGTCGAGTCTTGATTCACACGGCAGGCTTAGGACAGTCCTGCTGTTGTCCATTTCCTAGTTGTAGAAACTGAGGCACAAAGAAGTGAATCTGCCCAGCTTACACTTTGGAGCTCCCTGTAGGGAAAGAGCAAATTAGCCAAGACGGTGGTGCTCAGGCTATCTTGTCCCACAGCCTCTCACCCTCGTTTTGTAAATACATGGTTATGTAACAGCTGAGACCACATACAGCACCGCACGTGCGTGTCGCGACATACCTCATGGGCCACTTTTGTTCTGTAAACGTGTATAAGCTCCACCTGAAAAGCTCTTGGAGCTACATGATGGTCTGCGGTAGGGCTGCTGCACCAGCCCAGAGAGAGCACCAGCTGCTCTGCCCAGTGCGTCTTGCCCACACTGGGTTCAGTGAACAGTGAGATATAGGAAGACATCCCCTACCCCAGTTACTCACTGCCCTTGTGAAGAAAAAATCCCAGAGGCAAGTCCTGGCACGTGCAGGGCTGGCCATAGGACTGAGAGGTGGAGGGGGGTGGGTGTGCCGGGAGATGAAGCCCCAGAATGCAGGAGGGGAGCTTGGGAGCCCCTGACAGAATGCAAAGCCATCGCTGTGTAAATGTGCAGACCCCAGAGAGAGGCCAGCAGACCGCGTGCTCTGGTGCTTCAGCTCCGAAGTGATGGGGGCTGAGCCGGCGACGGAGGTCATTCAGGCCGCATGTGGCTAGAACGGACTTTCTTTTTAATCAATTTATTTTTATTTTTGTTTACACTGGACCTTTTTTGCTGCTCGGGCTTTCTCTAGCTGCGAGAGAACAGGGGCTGTCTTGGGTGTGGTGCTCAGACTTCTGCGGTGGCCTCCCCTGTGGCCGAGCACGGGGCGTGGGCTCTGGGGTTTCGCATCGGGCTTTAGTTGCCCCGAGGCACATGCAGCCTTCCCAGGCCGGGGATTGTCCCCGGCGTTGGCAGGTGGGGTCTTCCCCGTTGTGTCACCAGGGAAGTCCTAGAATCGAGTTTTGATGCTTAAAAGGGCAAATCTTTACCTAAATAGAAAATTTTACTTTCCTTAACAGCTCATTTTCCAGGGTTTCCAGGCAGTTAAGTTTTCTCTGTAATTAATGAAATGTGCTGCTGACCTTTTGTGCTTCGTTAACTGAATTTTTGTTGAACTCTCATTTGTATGACAG
Seq C2 exon
GTTGCTGTTGTCAAAATGAAGAACACTGAACGAATATACGCCATGAAAATCCTTAACAAGTGGGAAATGCTGAAAAGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456:ENSBTAT00000021879:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(4.8=41.9)
A:
NA
C2:
PF0006920=Pkinase=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]