HsaINT0031682 @ hg38
Intron Retention
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:103008472-103012188:-
Coord C1 exon
chr14:103012097-103012188
Coord A exon
chr14:103008556-103012096
Coord C2 exon
chr14:103008472-103008555
Length
3541 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
AACTCACATTTGCACTGCAGGTT
3' ss Score
6.47
Exon sequences
Seq C1 exon
CTAAACCATTTACACAGCTGGTGAAAGAAATGCAGCTTCATCGAGAAGACTTTGAAATAATTAAAGTAATTGGAAGAGGTGCTTTTGGTGAG
Seq A exon
GTAAGATAAACTTCATTTTGTTAACTTTGCCTAAATTGCCAAAACATCAGCAGCTTCCATTTCACCTTTTTGTGCACCTATACATTGGTTTGGGGATGAGGTAATTAGTATTATTTGGAGAGTTTGTTTTTTCCTCTCTCTCTTTCTAAGATGAGGTCTCACCATGTTGCCCAGGCTGGCTTTGAACTCCTGGGCTCAAGTGATCTCCCCGCCTCGGCCTCCCAAGGAGCTGGGGAGAAAATCTGAAAGATAGAATGAAGAGAAAGGAGACTCGAAAGCTTCTGACTGACCTGGGAGATTGTTGGGACCAAAAATAGTTTCTTCAGATGTAGTTTTTTTTGTTTTTGTTTTTGAGATGGACGTCTTGCACTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTAACGGCAACCTTTGCCTTCTGGGTTCAAGCTATCCTCATGCCTCAGCCTTCCGAGTAGCTGGGACTACAGGTGCTGACACTGTGCCTAGCTAATTTTTGTATTTTTTGTAGAGATGAGGTTTTGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCACCTGCCCAGATGCCCCGCCCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGTCACCACGCCCAGCCTTCTGACGTAGTTTCTAAAACTCCATTTGTTAATTGAATTTTGACTTCTTGGCATTTTCTAAAAAACACAGAGAGGGTCGAATAGCAGCTGTTTTCATGCTCTGTACTTGCTTGCTGTTGACACACGCGGTGTGGCTCTGGGTCCGGTTGGCTTTGCCTAGGGGAGGAGGGCCAGTCATGCAGGTGCAGCTGGAGAGGCTCACCAGGTCCCTTGTATGGGGCTGGGAGCCCTGCCCCAGGAGGCCCGTGGCACGGTGTGGCCTCGCCTTCCAGGCCATCTCCACAGACCTGCCTCGGCCTTGCAGAACAGTTCTGCCAAGACCAAGGGAGAGGTCAGGCTCCCTCAGCGGCCGCGGTACCGCCTCGGGTGGTTTGACAGTGAGTCACCGGAAGAGCTTTGCTGCTGCTTTTTTTGTTTTTTGAGATGGAGTCTCGCTGTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTCCGCTCACTGCAAGCTCTGCCTCCTGGCTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACCACAGGTGCCCGCCACCAGGCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCCGCCCATCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCAAGTTTTGCTTCTTAAACTGTGCAGTGCCTTAGCACCTATGCTGAGGTTTGATCTAAGCTCTCCTTGGCTGGGGAACTGTGCCTTTTGGTTCACTGAGGAAAAATCAAACAAGGAAACGCCCTGTGTCACATCCCAGCAGCAGGTGTGCTCTGCCCACAGCAAACCTACTGGACACCACTACAAAGCGAGATGGCCTTTGCTGTGCAGGGCGTGCATTTTCCAGTGTGCAGACGTGAAAGAAGGCAAATCAGTACTTTAGGGAAATAGCCCCCCTCTCGCAGCACCATCCCCATGAGTGAGTCTCACCAGAGGGATAGGGGAGGAGAGCAGCCCCTGCAAGGCTCGTCCCATCGTGCCCGGAGCTCCCAGTTTATCTCAGTACAGACCCTGGATCCAGGCCTCACCAGCCAAAGTCAATTTACCACAGGCCAGGATGGGACAGAGAGTTTGTTTATTTTGTTTGAGATAGGGTCTTGCTCTGTCGCCCAGGCTGGAGTGTGCTGGCATGATCACAGCTCACTGCAGCCTCCACCACCCAGGCTCAGGTGACCCTTCTTCCTCAGCCTCCTGAGTAGTTGTGACTACAGGCATGTGCCACCACGCCCGGCTAATTTTTTTTATTATTTGTAGAAATGGGGTGTCACTATGTTGCCCAGACTGATCTTGAACTCCTGGGCTCAAGCAACCCTCCCGCCCCAGCCTCCCAAGTAGCTGGGACCACAGGCATGCACCACTGTACCTGGCTAGTTGTTTTCTTTTTTTCTTTTTAGTAGAGACAGGGATCTTGCTATGTTGCCCAGGCTAGTCTCAAACTCCTGGGCACAAGTGATTGTCCTGCCTCCACCTTCAAGAGTGCTGGGATTATAGGCATGAGCCACTGTACCTAGTTGAGAAAGCCTTTTAAAAGTAAAAACAGATTGCATTAAGTGATTGCCTGTCTGTCTGCTACCAAGCATTGAGCTGTGCCAGGCATGGGGGCTTTGGAGGTGAGCAGGGCCCAGGCCACACAGAGCCCTTCAGCCATGGCAGGACTTTCCAGAATGCATTTAGGAGGGAGGGAGAGGCACACCAGGGCAGAGAGACGACCAAGGGAAATGAAGGAATGAGAGAGAAAATTGTTTTAACAGAATGGTTTACGGTTATTTTTAGTACTCTTTTTTGCCAAAAACTTAATGCAAAACTCAGTTTTGTGTGAGTTTCAAAGAAGATAACATTGATCGCTTTTTGAGCTCCTCTGATTGAAGGGAGCCTGTCCTTTCCATGCGGCCTTTGCTTCTTGGATTCCCTCCTTGGTCTTGTTCCCTTGGAGCCTCAGAGTCCATATCTGTACAAGATGGATTTTAGAAATCCCCCGCAGCTGGGGTCGCTGTGAGGGTGAAGTGGGGGTGCGGATGCGCGGCTCAACACCGTCTCTGGCACGCAGAATGTGCCTGGTGAATGGCAGCTCTCACAGTGACTCTACGATGTGACTGTGTGGTATTTGATGTTAGAAACAGGCAGGTAGATGATACTGCCATTTAAGACCTCTTCAGGCCATGGCTGCTGCAGGCACGGGGACATGCTGGCTGCTTGCCATTGGCAGCCAGAAGGTATGGAAGCCGCTGTCACTGCCAGTGAGTAGCTTACAGGAAGTGCTGAGTTGGAGACTTGGGCCCGTGTGTGAGTGACTTACGTAGGGTGGAATGCACCAGACAATGGTGCAGACATCTTGACGGGTGTTGGTAGTGATGGCAGAGCTTATTCAAGATTTGGTAGAAACTGGAAAGTCCAAGAGGACTTCCTGAAGGAGGTGGCACTTGAATTGTTCTTTAAAGAATGTGGCTGGTGGCCGCGCGCTGAGTGCTGACTGTGCCCCACAGTGTGCTGGGCACATTAACTGTCAGTGCTCATGGGTCCTCATAGGTGTCTCAGGAGTCCGGTCCTGCCATTAACCTCCTGTAGTGGTGGAACCCGAGCCATAAAGGGGTGAATTTGCAGGAGTGAAACTCCGGAGCCCACGTGGCCGGTCCCTTTCTCTGTGAAGAAAAGGTTCTTGATGCAGGAACTGGCACATGCTAGGTGGGAAACTTGGCTTTCGGTCACTGCTGGTTTCACAGGCTCCTGGGCTGTTAGGATTTCACTACAGTTTAGCTCCAGCGTGCTAGCCTTTTGTTCAAGAACCGCATCTTTGTTCAACTCACATTTGCACTGCAG
Seq C2 exon
GTTGCTGTTGTCAAAATGAAGAATACTGAACGAATTTATGCAATGAAAATCCTCAACAAGTGGGAGATGCTGAAAAGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752:ENST00000361246:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(10.2=41.9)
A:
NA
C2:
PF0006920=Pkinase=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development