BtaINT0035057 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69290129-69290928:-
Coord C1 exon
chr21:69290792-69290928
Coord A exon
chr21:69290269-69290791
Coord C2 exon
chr21:69290129-69290268
Length
523 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
ACGGTCACTTTGATCTGCAGATC
3' ss Score
8.43
Exon sequences
Seq C1 exon
TGTGCTCGTTTGCCTGCCACGTGTCCTGCAGAGACCGCGCCCCCCAAGTGTGCCCCATCCCCCCCGAGCAGTCCAAGCGGCCTCTAGGTGTGGACGTGCAGAGAGGCATCGGAACAGCCTACAAGGGCTACGTGAAG
Seq A exon
GTAGGACGTGACCCACGGCCATGCTCAGGTGTGCGGCCAGCCTGCTGACCATAGCCACGCCCGGCTGTACTGGAAATCCATCCTTTTGCCCCACGTGCCAGTTCCGGGTGCCCTGTCCTCCTGGGTCCTTCGGACCCCGCAGAAACACTCATCCAAGGCCTCTTGTCCCACCTCCTGGGCTGATGGGCTTTAAGCCCAGTGCCATCTGAAGGGGCTGCGCCGGGCCCAGCACTCCATGACACGCCACGTGTCACAGCACGCCACGTCTGCTATGAGCACGCCCATGCACTGAGCCACCCACCTTGTCTCCTGCAATCCCTTCGGTGATGGGGGGCTCCTCCCCAGCAGCGTCCCGAGCTTTCCTGGGCCCAGACGCAGCTCTGCTCCCAGCCTCAGCCGGCCAAGCAGCAGCGGGGGAGGACCCTGGCACGGCAGCCGCCTCCAAGAAGTCTCCCGGGCCTGCCTTTCCACTGCCTGCGGCTGGCGCCCTGGCCCTGGGGAACACGGTCACTTTGATCTGCAG
Seq C2 exon
ATCCCCAAACCAACCGGGGTGAAGAAGGGGTGGCAGCGAGCCTTCGCGGTGGTCTGTGACTGCAGGCTCTTCCTGTACGACCTGCCCGAGGGCAAGTCCGCCCAGCCCGGCGTCCTGGCCAGCCAAGTCCTGGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456:ENSBTAT00000021879:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(37.7=43.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTCGTTTGCCTGCC
R:
CCAGGACTTGGCTGGCCA
Band lengths:
270-793
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]