RnoINT0032652 @ rn6
Intron Retention
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135759383-135760180:-
Coord C1 exon
chr6:135760044-135760180
Coord A exon
chr6:135759523-135760043
Coord C2 exon
chr6:135759383-135759522
Length
521 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CGTGGTCAATTGGTCTGTAGGTC
3' ss Score
7.39
Exon sequences
Seq C1 exon
TCTGCGCGTTTTCCTGCCATGTGTCCTGCAAAGACAGCGCTCCCCAGGTGTGCCCCATACCTCCTGAGCAGTCCAAGCGGCCTCTCGGCGTAGACGTGCAGAGGGGCATAGGCACAGCCTACAAGGGCTACGTCAAG
Seq A exon
GTAGGTGGAGCCAGCGTCTCTGGCCCAGCGTGGCTCACTCTGCATTAGGTCATTAGGTCGGCTCCTAGCTTTGGTGTAGAGAGCAGCAATCACAGCTCATCTGTGGTTGAAGCCGCACTTTGCTGCCTGTCACGAAGAACCACTGGACAGGGGGAGTCCACCTACAGCTCCCTCCCACAGGAACTCCCTGGGTTGCTGGCCAGTGAGCTTCAAGTCAGGGCTCCAAAGCCAAGCAGGGCTTGCAAACCACAGGTTCTCAGGCTTCCCCATGTCCTCTTCCAGCCATAGCCTCCAGGATGCAGTAACCCCTGGTGCCTTGTGTTATCTTCCTGTTAACAAGCTTCTCTAGTCAGGCCCAAGCCTCCTGAGCCAGGACACAGGCTGGCTTGTCTACCACTCTGGGAAGGGCTGTCGGGAGAGCCAGGGCAGTCATATAGAAGGTGGACACAGACTGAGCAGTGTTAAGGGTCTGGCAGTCTCTGCCTGTGCTGCCTGGATCCACGTGGTCAATTGGTCTGTAG
Seq C2 exon
GTCCCGAAGCCCACAGGCGTGAAGAAAGGGTGGCAGCGGGCTTACGCAGTGGTCTGTGACTGCAAGCTCTTCCTGTACGACCTGCCAGAAGGGAAGTCCACCCAGCCTGGGGTCATCGCCAGTCAAGTCTTAGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675:ENSRNOT00000039059:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(37.7=43.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTTCCTGCCATGTGTCCT
R:
TGAGGTCTAAGACTTGACTGGC
Band lengths:
270-791
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]