HsaINT0031688 @ hg38
Intron Retention
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102949765-102950602:-
Coord C1 exon
chr14:102950466-102950602
Coord A exon
chr14:102949905-102950465
Coord C2 exon
chr14:102949765-102949904
Length
561 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CTGTTTGTTTTTATTCATAGGTC
3' ss Score
10.71
Exon sequences
Seq C1 exon
TGTGTTCCTTTGCTTGCCACGTGTCCTGCAAAGACGGTGCCCCCCAGGTGTGCCCAATACCTCCCGAGCAGTCCAAGAGGCCTCTGGGCGTGGACGTGCAGCGAGGCATCGGAACAGCCTACAAAGGCCATGTCAAG
Seq A exon
GTAGGCGGCTTCATCTCCGCCCTCAGCCCTCGGTGCCTGTGAGGTGCAGTGACCAATAGCCATGCCCAGCCACTCTTGAAAGCAGCCCCTTGCTGCGGCAGGTGGCCCTGGTGCCAGTCCTAGGGGGCTTACCCTCCTGGGCACTGAGGCCATCAGGTCGGCGCAGCCGCTGTTCTGAATGGCCTGGGCATCCTGAGGCCTCCACGCAGACGCTCACTCAGAGTCCATCCTGGGCTGAGTGTCCAGCCAGTGGGCAGAAGCTCAGTCTGAAAGCCACTGTGCCAGGCCCACCTCTACGAGACTGTCGGGCTGCGTGTACCACAGCACCCTGCATGGGGTGGACACAGCGTTGGCTGAGCTGCCAGCTTTCCCTGGCACCGTCTGCTGCCACGCATGGACCCCTCCCCAGCAACGCCTTGAGCCTTCTTGGGCAAACATCCCTCTGTCCAAACAGCTCTGCCGCCAGCCTGGCAGCTGGAAGGAGATTGTGAACGAGTGTAATGGGGCCTGGCGGCCTGCCTGGCCTGGTGGAACGTGGCCACTGTTTGTTTTTATTCATAG
Seq C2 exon
GTCCCAAAGCCCACGGGGGTGAAGAAGGGATGGCAGCGCGCATATGCAGTCGTCTGTGACTGCAAGCTCTTCCTGTATGATCTGCCTGAAGGAAAATCCACCCAGCCTGGTGTCATTGCGAGCCAAGTCTTGGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752:ENST00000361246:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(37.7=43.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCCTTTGCTTGCCACG
R:
CCAAGACTTGGCTCGCAATGA
Band lengths:
270-831
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development