BtaINT0035095 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43684535-43685419:-
Coord C1 exon
chr29:43685338-43685419
Coord A exon
chr29:43684752-43685337
Coord C2 exon
chr29:43684535-43684751
Length
586 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TGCCCCCTCTCTGCCCGTAGGTG
3' ss Score
13.86
Exon sequences
Seq C1 exon
GGACCCCCAGTTCTCAGCCGCCCCTGTCCTGGCCCCTGATGTTATCCATGCCCAATCCAAGGACCTGCCTCGCATCTTTAGG
Seq A exon
GTGAGTTCAGGGATGGGATGGGCCAGACCTCTGTCTGCCTCTGTGGTGGACCCCCTCCAGCTGCTCTTCTCCATCACTGTGGCTGCCTCCTTCATCCTGCCCGCCCGCCTGCACGTGGATGGCTACAGTAGCCTCCATTCCTGTCTGTGTGGCTACACGTCACCCCACAGTGCAGAGTTTTCCATACGTGAAGCTGGCTGTGCCCAGCCTTGTTTAGGGCCCTGCCGGCTCCCTGCCCGTCCCTGACCTTGAACACTCCTGGTTACTCCACTCGTCCCCCAGGCTCCAGCAGAAACGTCTCTTCCCCTGGGAGTTCGTCTCTCACGCTTAGCCTGGGTGAGCGGGCCCCGCCCTGTGTTCCCGAGAGGCCCTGTCCTGCCCTCTCGGTGGCACTGGTCCCAAGGCTCTGGAGTTGTCCCCGTGCTTGTCTGACCACCCCCCGCCTTGGCTTATCACCTGCTGCCAGCCAGCGCCTGACATTGCACTGGGCAGGCCCACCTGGTGCTCCAGGGCCTCAGCGACGGACAGAGGGAGCTGGCTGCCGGCGCTCTGCCCTCCAGCCTGGGTGCCCCCTCTCTGCCCGTAG
Seq C2 exon
GTGACGGCCTCTCAGCTGACTGTGCCGCCTGCCACATGCACCGTGCTGCTGCTGGCGGAGAGTGAGGGCGAGCGGGAGCGCTGGCTGCAGGTGCTGAGCGAGCTGCAACGGCTGCTGCTGGACGCGCGGCCCTGGCCCCGGCCCGTGTACACCCTCAAGGAGGCCTACGACAACGGGCTGCCGCTGCTGCCGCACACGCTCTGCGCCGCCATCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736:ENSBTAT00000034021:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(22.7=100)
A:
NA
C2:
PF0016924=PH=PD(30.3=49.3),PF0078017=CNH=PU(1.9=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCCCAGTTCTCAGCC
R:
CAGCCCGTTGTCGTAGGC
Band lengths:
262-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]