HsaINT0031726 @ hg19
Intron Retention
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:29829]
Coordinates
chr11:64598977-64599981:-
Coord C1 exon
chr11:64599900-64599981
Coord A exon
chr11:64599194-64599899
Coord C2 exon
chr11:64598977-64599193
Length
706 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GCTGGGGTCCTTGCCCACAGGTG
3' ss Score
9.41
Exon sequences
Seq C1 exon
GGACCCCCAGTTCTCGGCTACCCCTGTCCTGGCCTCTGATGTTATCCATGCCCAATCCAGGGACCTGCCACGCATCTTTAGG
Seq A exon
GTGAGTGCCTGGGATGAGATGGAGCAGCCACCATCCACCTCCCCATGCTGTCCCAGCTCTGGCCACTGTCCCCCCACTTCATACTGCCCTCTTGGGCCAGCCCACAACCACAGCACGCTTTCCACGTGAGCACCTGGCCCGGTCTCACCTCGTTTAGGATCTGCTGTGGCTTCCCATCGTCTGCGGGGCTCGGGGTGCTCCTGACCTAGCCCTTGAGGCCCCAAGGCTCTGACCCTGCAGGCCTCCCAGCCCTCTCCCTTGGCACCTGTCTCTGCTCTGGTCACACCTTGCTCTCTCCAGTTCTGAAGGCGCCCTGTGCCTGTGTGCACCACATTCTCAGTCCTTCACATCTGTCTTTGCACGAAATTGCCGGCCCTGCACTGGAGCCCAGCCCCTCACCTACCTTGACTACTCCTGGTTAGTTACTCGTCCCTCAGGCTTCAGCAGAAATGTCTGGTCTCCTGGGAAGTCATCCTTCACTTCCCGGCCCCGGTTTGGGTCCCTCTGTGTTCCCACTAGGCCCGTCCTTGCCCCATTATGGCGCTGGTCGCATGGCTCTGGAGTTGTCTGTTTGCCTGTCTGGCCTACTCCCTGCTGCTGACAGTGCACGCTAGGCCCCCGGGGCACAGCGGCTGCTGGAGGCAGGAAGGGAGGGAGGACAGATGGCTCTGGTCCACGGCCCTCCAGCTGGGGTCCTTGCCCACAG
Seq C2 exon
GTGACAACCTCCCAGCTGGCAGTGCCGCCCACCACGTGCACTGTGCTGCTGCTGGCAGAGAGCGAGGGGGAGCGGGAACGCTGGCTGCAGGTGCTGGGTGAGCTGCAGCGGCTGCTGCTGGACGCGCGGCCAAGACCCCGGCCCGTGTACACACTCAAGGAGGCTTACGACAACGGGCTGCCGCTGCTGCCTCACACGCTCTGCGCTGCCATCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219-CDC42BPG:NM_017525:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(22.7=100)
A:
NA
C2:
PF0016924=PH=PD(30.3=49.3),PF0078017=CNH=PU(1.9=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCCAGTTCTCGGCTAC
R:
GAGGATGGCAGCGCAGAG
Band lengths:
297-1003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)