RnoINT0032690 @ rn6
Intron Retention
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221684864-221686204:+
Coord C1 exon
chr1:221684864-221684945
Coord A exon
chr1:221684946-221685987
Coord C2 exon
chr1:221685988-221686204
Length
1042 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GTCTGACTCCCTGTCCACAGGTG
3' ss Score
11.08
Exon sequences
Seq C1 exon
GGATCCCCAGTTCTCAGCCACCCCTGTCTTAGCTCCAGATGTCATCCATGCCCAATCCAAGGACCTGCCACGCATCTTTAGG
Seq A exon
GTGAGCGCTCAGAGCAGGAGGACCCAGCCTCCATCTCTCTCCCTGTGCTGACCCTGTCTTGGTTATTGCTGTATCTCCTCTCTGTCCCCTCTGCCAGCCACCTCACTGCCACATGCTGTCCATCCATAGCCACCATGAGTTTGCCACACAGCAATCTGACTATTTCCTGCTTTGTTTAAAAACCCTTGGATGGGGTTTGGGGATTTAACTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAAGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAGAAAAGAAAAAAAAAAACAAAAACAAAAAAAAACCCCTTGGATGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGCTCACAACAATCTGTAAAGAGATCGGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTACTTATATATAATAAATGAATAAATAAATCTTTAAAAAAAATTTTAAAAAACAAACAAACCCTTGGATGGCTTCCCAGTACCATCAGGAGGCTCTCAAACAATACCCTGAGCCACCTAGCATTCGAGCCTGCAGACATCTTCCGCCCTCAACCCTGGAGTCCGTAACTACTCTGGCCATGCCTTGTTCCTTCTAGCCTTGCGTTCATGTGTAACTCCTCCTCACTCTCATCCCTCTGGACAGAATTGCCAGCACCCTCAGGCCCAGTACCTTGTCCCCAGGTTCACTAACACCGGGTGGTGGACTTGTCCTCTCGGCAGTTACCCTTGCCCTCTTGGCCTGCTTCAGGGATTCTGTCTGCATTCCTGCAATGCTTCTCTTTCCTGTTATGGTGCCCGTCACTAGGCTCAGGCATTGCCTCTGCTTGTCTGGCACCATGTCTGGCCTGCTCCCTGCCTAGCACTACAGCTAGCTAGCTGGCAGTCGACCTGGCAAACCTCAGTAGGTAAAGGATGAAAGGTGGACATATGGCTGGCTGCCTCTTGGTTGGAGTCCTCCAGTCTGACTCCCTGTCCACAG
Seq C2 exon
GTGACAGCCTCCCAGCTGACAGTGCCACCATCCACATGTACTGTGCTGCTGCTGGCAGAGAACGAGGGGGAGCGGGAGCGTTGGCTTCAGGTGCTAAGTGAGCTGCAGCGGCTGCTCCTGGACGCACGCCCAAGGCCCCGACCAGTGTACACACTCAAGGAGGCCTATGACAATGGACTGCCGCTGCTGCCTCATACGCTCTGTGCTGCTATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456:ENSRNOT00000038016:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(22.7=100)
A:
NA
C2:
PF0016924=PH=PD(30.3=49.3),PF0078017=CNH=PU(1.9=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCCAGTTCTCAGCCA
R:
CACAGAGCGTATGAGGCAGC
Band lengths:
287-1329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]