BtaINT0035107 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43691359-43691929:-
Coord C1 exon
chr29:43691729-43691929
Coord A exon
chr29:43691605-43691728
Coord C2 exon
chr29:43691359-43691604
Length
124 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGG
5' ss Score
2.59
3' ss Seq
CCCGTCCCCCGGGACCTCAGGAC
3' ss Score
4.68
Exon sequences
Seq C1 exon
GTGGACTCATCGGTGGCGGTGGGGACACCCGACTACATCTCCCCTGAGATCCTGCAGGCCATGGAGGAGGGCAAGGGCCACTACGGCCCACAGTGCGACTGGTGGTCCCTGGGGGTCTGTGCCTATGAGCTGCTCTTCGGGGAGACGCCCTTCTATGCTGAATCTCTGGTGGAAACCTACGGCAAGATCATGAACCACGAG
Seq A exon
GTCTGGCTGCCAGGCCCTGGGATTCTGGGCGGGCCGTGGGACTCCTGAGGCTGTGAGGTTGGAGATGCCCTGGGTGGGGGTAGGATTCCAGACACTCACCTGCACCCGTCCCCCGGGACCTCAG
Seq C2 exon
GACCACCTGCAGTTCCCCGACGTGCCCGACGTGCCAGCCAGCGCCCAAGACCTGATCCGCCAGCTGCTGTGCCGCCAGGAGGAGCGTCTGGGCCGCAGAGGGCTGGACGACTTCCGGAACCACCCCTTCTTTGAAGGCGTGGACTGGGAGAGGCTGGCGACCAGCACTGCCCCCTACATCCCCGAGCTGCGCGGGCCCATGGACACCTCCAACTTCGATGTGGACGACGACACCCTCAACCATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736:ENSBTAT00000034021:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.280
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.8=100)
A:
NA
C2:
PF0006920=Pkinase=PD(16.2=52.4),PF0043319=Pkinase_C=PU(41.7=24.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAAGATCATGAACCACGA
R:
CGTCCACATCGAAGTTGGAGG
Band lengths:
248-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]