HsaINT0031740 @ hg19
Intron Retention
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:29829]
Coordinates
chr11:64606126-64606705:-
Coord C1 exon
chr11:64606505-64606705
Coord A exon
chr11:64606375-64606504
Coord C2 exon
chr11:64606126-64606374
Length
130 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGG
5' ss Score
2.59
3' ss Seq
CCCCCTCCCCCGACCCACAGGAC
3' ss Score
11.15
Exon sequences
Seq C1 exon
GTGGATTCATCAGTGGCAGTAGGGACGCCGGACTATATCTCCCCTGAGATCCTGCAGGCCATGGAGGAGGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCGCTTGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAGACGCCCTTCTATGCTGAGTCCTTGGTGGAAACCTACGGCAAGATCATGAACCACGAG
Seq A exon
GTCTGGACACCAGGCTCTGGGCTTCCAGAGGGGGCAGTGGGACCCCTGAGTCTGTGTGGTTGGAAGTACCGGCAGGTGAGGCTGGGTTCCTGGACACTTGACCCAGCCTGCCCCCTCCCCCGACCCACAG
Seq C2 exon
GACCACCTGCAGTTCCCCCCGGACGTGCCTGACGTGCCAGCCAGCGCCCAAGACCTGATCCGCCAGCTGCTGTGTCGCCAGGAAGAGCGGCTAGGCCGTGGTGGGCTGGATGACTTCCGGAACCATCCTTTCTTCGAAGGCGTGGACTGGGAGCGGCTGGCGAGCAGCACGGCCCCCTATATTCCTGAGCTGCGGGGGCCCATGGACACCTCCAACTTTGATGTGGATGACGACACCCTCAACCATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219-CDC42BPG:NM_017525:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.349
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.7=100)
A:
NA
C2:
PF0006920=Pkinase=PD(16.5=53.0),PF0043319=Pkinase_C=PU(41.7=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGCCCTTCTATGCTGAGT
R:
TCAGGAATATAGGGGGCCGTG
Band lengths:
247-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)