RnoINT0032704 @ rn6
Intron Retention
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221678467-221679010:+
Coord C1 exon
chr1:221678467-221678667
Coord A exon
chr1:221678668-221678761
Coord C2 exon
chr1:221678762-221679010
Length
94 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGA
5' ss Score
2.68
3' ss Seq
TGCCCTCCTTTGATCCACAGGAC
3' ss Score
10.84
Exon sequences
Seq C1 exon
GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCCCTGGGAGTCTGCGCCTACGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAGTCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG
Seq A exon
GTCTGACTGGCTCTGGGACTCTATATTGTGTGATTGCGGGCAACTTCAGATCAACTGGGCTTCAGACTGACCTGTGCCCTCCTTTGATCCACAG
Seq C2 exon
GACCACCTCCAGTTCCCCTCTGATGTAGATGACGTGCCTGCTAGTGCCCAGGCCCTGATCCGGCAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGCGGTGGACTGGACGACTTCCGGAGCCACCCGTTCTTTGAAGGGGTTGATTGGGAGAGACTTGCAACCAGCACAGCACCCTACATCCCTGAGCTTCGCGGGCCGGTGGATACCTCCAACTTCGATGTGGATGATGATACCCTCAACCGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456:ENSRNOT00000038016:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.229
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.7=100)
A:
NA
C2:
PF0006920=Pkinase=PD(16.5=53.0),PF0043319=Pkinase_C=PU(41.7=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCAAGATCATGAACCACG
R:
AACCCCTTCAAAGAACGGGTG
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]