BtaINT0036095 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013085 | CELA3B
Description
Bos taurus chymotrypsin-like elastase family, member 3B (CELA3B), mRNA. [Source:RefSeq mRNA;Acc:NM_001166518]
Coordinates
chr2:131431593-131432711:-
Coord C1 exon
chr2:131432651-131432711
Coord A exon
chr2:131431679-131432650
Coord C2 exon
chr2:131431593-131431678
Length
972 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
ACTTCTCCTGTCCCCTCTAGCCT
3' ss Score
9.04
Exon sequences
Seq C1 exon
CTTATCGTCTCAAAAGTCATGATGATCCAGCTGCTGAGTTTTCTCCTACTTGTGGCCCTTG
Seq A exon
GTAAGACTCCAGCCTGTGCTGCCCTGGACCAGGATCCCTTGAAATCTACCACCCACCCTGAGTCTCTTGAACTCAATGCCTCTCATAGGAGAGGGCTCAGCTTGGAGCTGAGGATGGCTGTGGAGGTTTTCAGCTCAGTGCTTGAGCAGGAGAATCGAGGGGAAGCTGTGGGTGATGGACCAGCTCAGGGGGAGGACTGGGGGACCCAAACCCCTGGGTGGGAGTCCTTGACAGAGCCTGTGGTAAACAAAGTGTAATGGTAAAGAGTCTGGGCTCTGTGGTTAGACTGCTTGGGTTTGGAATTTCTGTTCCTCGGCTTAACCCTCCAACTCTCCTCTCACACTCCCCTTACATATCCTATGATCTAGCCTTTTCCTGGTACCTCTGCCATATTACAGCACAGCTCAGGACCACCTTCTCCAGGCAGCCTCCCTAGACTAGCAGTAATGAATGGTAACAGGTCACGTTTACTGAATGCTTACTATATGCCCGGCAGAATGCTTGGGGTTTTTTTCTTACATTATCTTCTGCAATCCTCGCAGCAGCCCCGTGAGGTCTGTACTATTATCATTCCCATTTCGCAGATAGAGAAACTGACCCTCAGAGAAGTAAAGTGGCCCATCCTAGAACCAGGGGCAGAGCTGCACTTTGAATCCAGACAGCCTACTCCAAAGCTGCCCCTCTTCATGACAATAGCTGTCGCCCTCGAGCCCGCTTTGGGCACCAGGCGCTGTTCTAAGTGCATCAGGTTTACTCCTGCCCTGAAAGGAAGCCACGTGTTCATCACCATCCCAGACTCCCAGGACTCCAGAAATCCCTGCTCTTGTCCAAACGCTCACTGTTGATACGCGGCTACCGGGGTCAGAGAGCGGAAGGAGTTGTGTGGGATATCACAGCCTGTCTGGGGCCCAGACCTCCTCTTTGCTTTGGGGGAACCTTGGGACTGACTGACACTTCTCCTGTCCCCTCTAG
Seq C2 exon
CCTCGGGCTTCAGCCAGCCTTTCTCCCGCCCCTCCTCCAGAGTTGTCAACGGCGAGGACGCGGTCCCCTACAGCTGGTCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013085:ENSBTAT00000017401:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=48.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]