HsaINT0033089 @ hg19
Intron Retention
Gene
ENSG00000219073 | CELA3B
Description
chymotrypsin-like elastase family, member 3B [Source:HGNC Symbol;Acc:15945]
Coordinates
chr1:22303418-22304947:+
Coord C1 exon
chr1:22303418-22303575
Coord A exon
chr1:22303576-22304861
Coord C2 exon
chr1:22304862-22304947
Length
1286 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
AGCTCTCCTCTCCCCTCTAGCCT
3' ss Score
8
Exon sequences
Seq C1 exon
ACCTGCATTTCCACCACCTGTTCTGGGAGTGGGGCCCAGTCAGCCCCCTTTGCTTACCTTCTGCCCTATATTAGAGCCCCAGGTTCTGTGCCCTTTTCCTATCATCGCAAAACTCATGATGCTCCGGCTGCTCAGTTCCCTCCTCCTTGTGGCCGTTG
Seq A exon
GTAAGACCCCAACCTGTGTGTGTGCTCCCTGGGCTGCCCTAGATTAGGAATCCTTGAAATCTACCACTTGCTCTAAGTCCCATGACACCCTATGCCTGGTTCCACAGGAGGGGGTCTCAGCTTGTACCCGGGGGCATGACTGTGGGGGCTTTCAGCTTATGATGGAGCAGGAGAGTGGAGGGGAAGCCGTGGATGGAGAAAGACCCCAAAGGGCTGTGGTGGAAGTCCTTGATGGGGGCAGTAAACAAAGTCAAACGGTTAAGAGTTTGGGCTGTGTGGTTGGACTTCTTGGGTTGGAATTTCCACTGTTCTGCTTACCACTCCAACTCTCCTCTCACACTCCCCCTACCTGGCTCCATATTCTATGCTCTGGCCTTTTCCTGGTCTCTCTGCCATATTACATTCCAGCTCAGGGCCACCTCTTCCAAGCAGCCTCCCTTGACTGACAATAATGGTAACAGATAACATTGATTGAGTGCTTACTATGCCAGGCAGAATGTTTAGGGTTTTCCTTATACTTTCTCATGTAATTCTCACAACAGCCTCAGGAGATCAGTACTATCATTTTCCCCATTTTACCGACCCTCAAGGAAGTAAAGTAGCTTATCATAGAACAAAAGGCAGAGCTGCACTTAATGTTTTTATTTTTTGCTTTTTTTTTTGTTGAGATGGGGTCTTGCTTTGTTGCCCAGACTGGTCTCAAAATCTTGGCCTCAAGCAATCCTACCACCTTAGCCTCCTGAGTAGCTGAGATTATAGGCACATGCCACCATACCTGGCTACTTTATTTTATTGTACTTTATTTTTCTAGAGATGAGGTCTTGCTATGTTGCCCAGGCTGGTCTCAAACTCCCGGGCTCAAGCGATCCTCCCGCCTCGGCCTCTCAAAGCACTAGGATTACAGGTGTGAACCACCACACACAGCCCAGAGCTGCACTTTGAACCCAGGAAGTCCTTCTTTAAAGCCTCCACTCTGTATGACAATAGCTCTCACTTTTTGAGGGCTCATTGAGGGCCAGGCATTGTTCTAAGTGTATCAAGCTCTTCAATCCTCCCAATGAAGGAGGCCACATTTGAATCTCTATCCCTGGAGTCTTGGGATTCTGGAAAGCCCTGCTCTAGTTTAAATGTTCACTATTCATATGTGGTTACTGAGGTCCAGAGGGCGAAAGGGGCTTGCATGGGGTCACACAGCCACTTGAAGGCACGGCTTGGACTGGGACCCTGGCCTCCTCTTTGCTTTTGGGGACCCTCCCGCTGATTGACAGCTCTCCTCTCCCCTCTAG
Seq C2 exon
CCTCAGGCTATGGCCCACCTTCCTCTCGCCCTTCCAGCCGCGTTGTCAATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000219073-CELA3B:NM_007352:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.345
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(11.7=48.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCATTTCCACCACCTGTT
R:
CTGCCAGGGCCAGCTGTAG
Band lengths:
243-1529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)