MmuINT0034151 @ mm9
Intron Retention
Gene
ENSMUSG00000023433 | Cela3b
Description
chymotrypsin-like elastase family, member 3B [Source:MGI Symbol;Acc:MGI:1915118]
Coordinates
chr4:136984384-136986435:-
Coord C1 exon
chr4:136986375-136986435
Coord A exon
chr4:136984470-136986374
Coord C2 exon
chr4:136984384-136984469
Length
1905 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TTCTCAATTGTCACCTCTAGCCT
3' ss Score
6.62
Exon sequences
Seq C1 exon
CTAATCACCCTGAAGCTCACCATGCTCCGACTGCTGAGTTCCCTCCTGCTTGTGGCCCTTG
Seq A exon
GTAAGCCCTCAGCTTGTCCCATGTCTCCTTGCTGCATCAGCCTGGGAGCCCCTGAAATATGACAGACCCTCACTCTTTGCCTCCCTGGGTGACACCCCATACCTACTTCTACAGAAGGTCTCAGCTTCAACTAGGACAGGACTGTAGGGCCTTGAGCTTGGTTCATGGCCAGGAGTGGAGGAGGCAGGCAAGCTTCAGATGACCCAGCTCAGAAAGACTGGGAGCCCACGGGGCAAGACTCCTTGAGGGGACAATGGATGACCTCCTGACTTAAGGTCTGAACTCTGAGGTTTGATGGCTCCAACTCAAACTTTCAGTCTTCTGTGACACAGCCCACAAAGCTTCCCTTGGCCGACCATATTGTACCCGATGGCATTTTCTAAGTGTCTACTATGTCAGGCAGGTGACGGTGGGACAGGTTGTTTTTCTTCTATGACCCCAGGTAAGTCAGCCTAGTTTGGAGTCAGTGGGGAAACTGACTTTTAAAGTAACACAGCCATCCTGAGTCGGTGGCCGAGTTTCACTTCGTACCCAGCTGTGTCACTCAAACAGCCACTTCATAGGTCAGTCACCTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGTTGTCTTCAGATACACCAGAAGAGGGCATCGGATCTCATTACGGGTGGTTGTGAGCCACCACGTGGTTGCTGGGATTTGAACTTCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGGCAGGGTTTCTCTGTATAGACCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAAACCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGTATAAATCACCTTTTTAAAAAGAATTTTTTTTTAATAGAAAGTCTCATGTTATAGCTCAGCCTGCCTTTCCTTGAATTCCTAGCAATCCCACTGCCTCCCTCTCTCAAGCACAGGGACTACAGGCCTGAGCTAGCATGTCACTTTTAGCTGCCATTTTTAATTTTTTTTATTACATTTATTTATTTGTTAGGGACTGTATGTGTGTTACAGAGCTCACGTGGAGACCAGAGAACAACTTGCAGGAGTCAGTTCTCTCTGTTGGGATCCCAGGGATAAAACTCAGGTCATTAGCCCGGGTTACCACGCAGCCAGCCCTCTTTTTTTCTTTTGGGGTGGGGTAAAAGATTTCACTCTGTTAGCCCAGGCTTACCTCAAACCAGTGGCTGATCCTTTGAGCTCGAATCCTCAATGCTGGGATCACACCCTAATGCCCAGCATTTTGGTTTCAGAGTTTGGGGGCTCCCTGACTACCAGGCTCAGTCCCAAGTCTTTAGTCTTTGAGATAAAAGAGACCCTGCCCTCCTCTGACTCTGGGAAGCCCTGTTGTAGGTTAAATGCATAAACACTACTTCATACCTGGCTAGTGAAGTCTAGAGAGGGGAAGGGCTCCCCCTCCTCTTCCTCCCCTTCCTTTTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCTTTCTCTTCTTCCCCCTCTTCCTCTTCTTTATACTCCTCTTCTTCCTCTTCCTCCTCTCCCTCCTCAATCTCTTCTTCCTCCTCTTCCTCTTCTTTTGCTTCTTTCTTTTTCTTTTTAGACAGGATCTCTTTGTGTAGCATTGGCTGATCTGGAATTCACCATATAGGTCAAGCTGGCCTTGAATATACAGAATTCAGCTTGCCTCTGCCTCCAAATGCACCATGCTCAAACACCAGCTCTCCCACCCCGACCCCTTTCTTCTGAGGACACTCTGGCTGACTGGCTTCTCAATTGTCACCTCTAG
Seq C2 exon
CCTCAGGCTGTGGACAGCCTTCCCACAACCCCTCCAGCCGAGTTGTCAATGGCGAGGAAGCTGTTCCCCACAGCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023433-Cela3b:NM_026419:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.276
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=48.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: