BtaINT0036783 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62699609-62700670:+
Coord C1 exon
chr16:62699609-62699745
Coord A exon
chr16:62699746-62700547
Coord C2 exon
chr16:62700548-62700670
Length
802 bp
Sequences
Splice sites
5' ss Seq
TAGGTTAAT
5' ss Score
1.23
3' ss Seq
AGTTTTTCTTTTCTTTGTAGGAA
3' ss Score
10.08
Exon sequences
Seq C1 exon
ATGGCGGAGTTGACTCGAACTCATATCTCAGATGCCATCACTGCTTCAGGAGCTCCCCTAGCAGCACTATATGATCACCAGCGGCAGCACGCTCCAGACTTTGTGAAACAACTAAGGACAAGAGCTGAAACAGATAG
Seq A exon
GTTAATATCCAGTCATTCAGCAAATATGTAATGAATATCTGTTATGTTCCAAGCACTGTTGTGGGTACTGAAAATATAATTATGGACATATAATCTAGTGGGGAAGAGAGACATTAATCAAATGCTCTTTTAGGTGAGTAAGCACAAATTAAGATAAGTATTACGAAAGAAAGGAACATTTGTTTTTGAGATATACAGCAAATGAGTTTGAATAACATGGAAGTCAGAGAAGATTTTCCTGAGGAAGTAAAGCTAATGGTGAGATCTAGTGGATGAAAAGGAATCAGTGATATAAAGGAGATAAGGAATAGGCAGGTCAGTGCATGCAAAGGTGGAAAAGAAAGTGAAAGAACACCAAGAAACTGGAGGCAGAGGGCGAAAGGAGAAAGGTAGGAGATGATGCAGGAGTCAGATCATGGTAGAACTTGGCAGATCCTCTGGATTTTGGAGTTTATTCTAGGAGCAATGAAAAGTCGCTAGAGAGTTTTTTAGGCAGTACTGGGTGATGTCATTATGTCTGTGTGTATATATTTTTTATATCAGCTTTGTCTCTAGTTCATAGATTTTTTTTGTCTATTCACATTCATTGATAATTGAGGTGATTTGTGTTTATTTTGCATAGTGAATAGATATTCTTTAGTGTGTTATATACTTTTCTATGAACAAATACCTTTCTCAAATAGTTCGTAACCCGTATTTCATAATTTCTATTCAAGATTTTATCTCAATATTAAACAGTATTTAAAATCTTTCTCTTATTTGAGACTTTAAATGTTTTAATCAGTTTTTCTTTTCTTTGTAG
Seq C2 exon
GAAAAGTCAATCTGGTTCACTTTCTCAGAGTAAAGAAGGAACCCTTGACTCTAAGCATCAGAAATTTTCCCCTTCGTATGATAGTTATTCTGAGTCTTCAAGATACAAGAATCGTGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082:ENSBTAT00000010631:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=NA C2=0.929
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCGGAGTTGACTCGAACT
R:
TCACGATTCTTGTATCTTGAAGACT
Band lengths:
254-1056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development