GgaINT0038290 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6332594-6333210:-
Coord C1 exon
chr8:6333074-6333210
Coord A exon
chr8:6332711-6333073
Coord C2 exon
chr8:6332594-6332710
Length
363 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTTG
5' ss Score
1.77
3' ss Seq
CAAATGCTTTCTCTTCTCAGGAA
3' ss Score
9.01
Exon sequences
Seq C1 exon
ATGACAGAGCTGGCACGAACCCAGATCTCAGATACTGTCAGTGCTCCAGCTGCTCCAGTCACCACTTTGTTTGACCACCAGCGACAGCATCACTCGGAGTTCATGAAACAACTGAGAGCCCGAACTGATACAAACAG
Seq A exon
GTTTTGTCACATGTTTCATAACTTGGGAGGGGGGATGTAAGATTTGTTAGTTTTTGCTTCACGTACTTTTAAAGAAAACTATAGTATTTCATACTAACCGAACATTTAAGAACTTAAATTCCAACTCTGTCTCCTTTATATTGTACCTCGAAGAAGAGATACTAACTGATTCTTTATGGCTCTTTATAAAAGAGTAAGAGAAGATGCTCTAGGTATTTCTTGGGATGATTTAACTTGTCTAGATTTTAAGTATTTTCTTATAAATTTTAGCTATTCCTACTTCTACTAAACTGACTAAAGCTTATGGAATCTATTCAGTATTTAAGACAATGTAGATTTAACTCAAATGCTTTCTCTTCTCAG
Seq C2 exon
GAAATGTGAGACTGCTGTCATGTCACAAAGTAAAGAGGCAGGTGACTCAAAACAGACTTACTCACCAGCGTTTGACAGTTACTCAGAGTCCTCAAGATCAAAGGTTCATGATCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGAGCTGGCACGAACC
R:
CGATCATGAACCTTTGATCTTGAGG
Band lengths:
249-612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]